Expression of 1-1-7.3.8.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.840830.646
27DAP/17DAP0.682870.422
39DAP/27DAP2.980720.285
41DAP/39DAP0.723790.483
42DAP/41DAP1.718160.719
43DAP/42DAP1.069270.945
47DAP/43DAP0.972130.847
52DAP/47DAP1.290520.948
57DAP/52DAP1.427940.609

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.56595
17DAP/reference0.49262
27DAP/reference0.73971
39DAP/reference0.91547
41DAP/reference1.310031
42DAP/reference0.64903
43DAP/referenceN/AN/A
47DAP/reference2.10068
52DAP/reference0.62627
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.92090.595
27DAP/17DAP1.066880.938
39DAP/27DAP0.838710.388
41DAP/39DAP0.891740.839
42DAP/41DAP1.154050.916
43DAP/42DAP0.981250.854
47DAP/43DAP1.068770.897
52DAP/47DAP0.967520.919
57DAP/52DAP1.042340.856
57DAP/7DAP0.755430.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.189490.03
17DAP/reference1.339310.013
27DAP/reference1.595310.013
39DAP/reference1.205210.062
41DAP/reference1.526710.016
42DAP/reference1.495790.006
43DAP/reference1.694890.007
47DAP/reference1.521150.017
52DAP/reference1.851060.011
57DAP/reference1.386110.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.744070.154
17DAP/reference0.4005
27DAP/referenceN/AN/A
39DAP/reference2.57869
41DAP/reference2.208151
42DAP/reference1.44495
43DAP/reference0.842290.277
47DAP/reference2.456740.008
52DAP/reference0.957530.576
57DAP/reference1.19857

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.570690.015
17DAP/reference1.267950.159
27DAP/reference1.206540.143
39DAP/reference1.194570.112
41DAP/reference1.142240.205
42DAP/reference1.52530.011
43DAP/reference1.45210.008
47DAP/reference1.65346
52DAP/reference1.373220.341
57DAP/reference1.326310.147

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.086141
26DAP/20DAPN/AN/A
34DAP/26DAP1.37699
51DAP/34DAP1.01260.883
52DAP/51DAP1.638640.676
53DAP/52DAP1.603060.806
55DAP/53DAP1.257510.855
57DAP/55DAP0.86306
62DAP/57DAP1.0083
68DAP/62DAP1.14372
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.392270.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M820.9515
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.90265
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.834490.71
IL1-4/WTpooled1.306750.426
WT/WTpooled1.27026

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.120960.325
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A