Expression of 1-1-7.3.9.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081510.997
27DAP/17DAP1.558080.758
39DAP/27DAP1.355110.258
41DAP/39DAP0.970290.791
42DAP/41DAP0.866951
43DAP/42DAP1.171880.993
47DAP/43DAP1.286480.455
52DAP/47DAP0.997930.973
57DAP/52DAP1.367960.944

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.918380.601
17DAP/reference1.071810.74
27DAP/reference1.18990.779
39DAP/reference1.199930.706
41DAP/reference0.868550.201
42DAP/reference2.729040.006
43DAP/referenceN/AN/A
47DAP/reference1.675440.013
52DAP/reference1.95130.043
57DAP/reference1.40032

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.6701
27DAP/17DAP1.092790.794
39DAP/27DAP1.46842
41DAP/39DAPN/AN/A
42DAP/41DAP2.49727
43DAP/42DAP2.421130.017
47DAP/43DAP1.361480.948
52DAP/47DAP0.541530.034
57DAP/52DAP1.341920.5
57DAP/7DAP1.53946

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.7547
17DAP/reference1.22901
27DAP/reference1.061490.974
39DAP/reference1.34822
41DAP/reference1.3782
42DAP/reference1.547760.686
43DAP/referenceN/AN/A
47DAP/reference1.436970.345
52DAP/reference1.706950.019
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882720.374
17DAP/reference1.132190.789
27DAP/reference0.58009
39DAP/reference1.152770.272
41DAP/reference1.139771
42DAP/reference1.391940.032
43DAP/reference0.93480.459
47DAP/reference1.350680.024
52DAP/reference1.346430.181
57DAP/reference1.722930.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.865480.29
17DAP/reference0.853150.146
27DAP/reference0.974770.657
39DAP/reference0.48699
41DAP/reference0.25684
42DAP/reference1.098981
43DAP/reference1.924960.396
47DAP/reference1.193690.901
52DAP/reference1.97312
57DAP/reference0.839140.534

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.893171
26DAP/20DAPN/AN/A
34DAP/26DAP0.66258
51DAP/34DAP0.884210.674
52DAP/51DAP1.312620.808
53DAP/52DAP1.886190.91
55DAP/53DAP1.57920.589
57DAP/55DAPN/AN/A
62DAP/57DAP0.675180.162
68DAP/62DAP0.64142
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.226880.081

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.758960.243
IL2-6/WTpooled0.966620.473
IL7-5/WTpooled1.389850.792
IL7-3/WTpooled1.443410.362
IL12-4/WTpooled1.088510.891
IL1-4/WTpooled0.967471
WT/WTpooled0.981371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.080920.245
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row11.528971
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control2.0790.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.246910.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A