Expression of 1-1-7.4.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12693 | 1 |
27DAP/17DAP | 1.82617 | 0.45 |
39DAP/27DAP | 5.12885 | 0.047 |
41DAP/39DAP | 1.1522 | 0.701 |
42DAP/41DAP | 0.58752 | 0.262 |
43DAP/42DAP | 0.72589 | 0.468 |
47DAP/43DAP | 0.39901 | 0.049 |
52DAP/47DAP | 1.27071 | 0.798 |
57DAP/52DAP | 0.81324 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85278 | 0.083 |
17DAP/reference | 0.9035 | 0.12 |
27DAP/reference | 0.87738 | 0.101 |
39DAP/reference | 0.91668 | 0.1 |
41DAP/reference | 0.92808 | 0.341 |
42DAP/reference | 1.13953 | 0.006 |
43DAP/reference | 0.96846 | 0.555 |
47DAP/reference | 1.07611 | 0.148 |
52DAP/reference | 1.05351 | 0.73 |
57DAP/reference | 0.99396 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21247 | 0.205 |
27DAP/17DAP | 1.12113 | 0.527 |
39DAP/27DAP | 0.86116 | 0.227 |
41DAP/39DAP | 1.21584 | 0.417 |
42DAP/41DAP | 1.11692 | 0.514 |
43DAP/42DAP | 1.24196 | 0.066 |
47DAP/43DAP | 1.06614 | 0.708 |
52DAP/47DAP | 0.63916 | 0.072 |
57DAP/52DAP | 1.02201 | 0.869 |
57DAP/7DAP | 1.27473 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25947 | 0.223 |
17DAP/reference | 0.85025 | 0.167 |
27DAP/reference | 0.73334 | 0.01 |
39DAP/reference | 0.89715 | 0.056 |
41DAP/reference | 1.02155 | 1 |
42DAP/reference | 0.95493 | 0.371 |
43DAP/reference | 0.79037 | 0.033 |
47DAP/reference | 1.31775 | 0.458 |
52DAP/reference | 0.83048 | 0.097 |
57DAP/reference | 0.80342 | 0.02 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89325 | 0.222 |
17DAP/reference | 0.86689 | 0.159 |
27DAP/reference | 1.06996 | 0.704 |
39DAP/reference | 1.33079 | 0.543 |
41DAP/reference | 1.19575 | 0.122 |
42DAP/reference | 1.21344 | 0.021 |
43DAP/reference | 0.99162 | 0.681 |
47DAP/reference | 1.41298 | 0.015 |
52DAP/reference | 1.27455 | 0.019 |
57DAP/reference | 1.09634 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97676 | 0.566 |
17DAP/reference | 1.02392 | 0.839 |
27DAP/reference | 0.72604 | 0.036 |
39DAP/reference | 0.88599 | 0.133 |
41DAP/reference | 0.88423 | 0.293 |
42DAP/reference | 0.83223 | 0.108 |
43DAP/reference | 0.98334 | 0.568 |
47DAP/reference | 1.12026 | 0.424 |
52DAP/reference | 0.82748 | 0.223 |
57DAP/reference | 1.69911 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01286 | 1 |
26DAP/20DAP | 0.79362 | 0.317 |
34DAP/26DAP | 0.82442 | 0.693 |
51DAP/34DAP | 0.74548 | 0.086 |
52DAP/51DAP | 0.89149 | 1 |
53DAP/52DAP | 1.6928 | 0.37 |
55DAP/53DAP | 1.10673 | 0.653 |
57DAP/55DAP | 0.95517 | 0.823 |
62DAP/57DAP | 0.93301 | 0.871 |
68DAP/62DAP | 1.34247 | 0.214 |
68DAP/14DAP | 1.6323 | 0.031 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.6282 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.91873 | 0.563 |
Mature Green Tomato/Ripe Tomato | 1.12396 | 0.437 |
Immature Eggplant/Mature Eggplant | 2.09767 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.58306 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.50986 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.91329 | |
12-2/M82 | 1.27922 | |
12-4/M82 | 0.86234 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.38954 | |
3-2/M82 | 0.51365 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.80272 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 2.41644 | 0.467 |
6-2/M82 | 3.38136 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.84465 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.0957 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.78529 | 1 |
IL2-6/WTpooled | 0.77464 | |
IL7-5/WTpooled | 1.42562 | 0.792 |
IL7-3/WTpooled | 1.15383 | 1 |
IL12-4/WTpooled | 0.67666 | 0.71 |
IL1-4/WTpooled | 1.09822 | 1 |
WT/WTpooled | 0.96731 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95971 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90464 | 0.849 |
DC3000/delta hrp 6h | 1.16914 | 0.857 |
DC3000/delta hrp 12h | 1.0285 | 1 |
DC3000/delta hrp 24h | 0.80699 | 0.134 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.25086 | 0.047 |
DC3000 delta B/DC3000 delta AB | 1.05657 | 0.528 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.36384 | 0.254 |
Exp 36h | 1.50285 | 0.489 |
Exp 60h | 1.67527 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99274 | 1 |
Var 0h | 0.97942 | 1 |
Var 12h I row2-row1 | 1.22659 | 0.201 |
Var 12h NI row2-row1 | 1.5921 | 0.649 |
Var 36h I row2-row1 | 0.89302 | 1 |
Var 36h NI row2-row1 | 0.914 | 0.706 |
Var 60h I row2-row1 | 0.59995 | 0.292 |
Var 60h NI row2-row1 | 0.94763 | 1 |
Time course 0hI-0hNI | 1.12398 | 0.574 |
Time course 12hI-12hNI | 1.96664 | 0.005 |
Time course 36hI-36hNI | 1.75028 | 0.006 |
Time course 60hI-60hNI | 4.66114 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.87536 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.98447 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07463 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02514 | 0.656 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.60849 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.50545 | 0.096 |
Manapal/WT (break) | 0.99905 | 1 |
Manapal/WT (red) | 0.64366 | 0.36 |
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