Expression of 1-1-7.4.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.126931
27DAP/17DAP1.826170.45
39DAP/27DAP5.128850.047
41DAP/39DAP1.15220.701
42DAP/41DAP0.587520.262
43DAP/42DAP0.725890.468
47DAP/43DAP0.399010.049
52DAP/47DAP1.270710.798
57DAP/52DAP0.813240.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.852780.083
17DAP/reference0.90350.12
27DAP/reference0.877380.101
39DAP/reference0.916680.1
41DAP/reference0.928080.341
42DAP/reference1.139530.006
43DAP/reference0.968460.555
47DAP/reference1.076110.148
52DAP/reference1.053510.73
57DAP/reference0.993960.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.212470.205
27DAP/17DAP1.121130.527
39DAP/27DAP0.861160.227
41DAP/39DAP1.215840.417
42DAP/41DAP1.116920.514
43DAP/42DAP1.241960.066
47DAP/43DAP1.066140.708
52DAP/47DAP0.639160.072
57DAP/52DAP1.022010.869
57DAP/7DAP1.274731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.259470.223
17DAP/reference0.850250.167
27DAP/reference0.733340.01
39DAP/reference0.897150.056
41DAP/reference1.021551
42DAP/reference0.954930.371
43DAP/reference0.790370.033
47DAP/reference1.317750.458
52DAP/reference0.830480.097
57DAP/reference0.803420.02

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893250.222
17DAP/reference0.866890.159
27DAP/reference1.069960.704
39DAP/reference1.330790.543
41DAP/reference1.195750.122
42DAP/reference1.213440.021
43DAP/reference0.991620.681
47DAP/reference1.412980.015
52DAP/reference1.274550.019
57DAP/reference1.096340.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.976760.566
17DAP/reference1.023920.839
27DAP/reference0.726040.036
39DAP/reference0.885990.133
41DAP/reference0.884230.293
42DAP/reference0.832230.108
43DAP/reference0.983340.568
47DAP/reference1.120260.424
52DAP/reference0.827480.223
57DAP/reference1.699110.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.012861
26DAP/20DAP0.793620.317
34DAP/26DAP0.824420.693
51DAP/34DAP0.745480.086
52DAP/51DAP0.891491
53DAP/52DAP1.69280.37
55DAP/53DAP1.106730.653
57DAP/55DAP0.955170.823
62DAP/57DAP0.933010.871
68DAP/62DAP1.342470.214
68DAP/14DAP1.63230.031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.62820.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.918730.563
Mature Green Tomato/Ripe Tomato1.123960.437
Immature Eggplant/Mature Eggplant2.097670.053
Ripe Pepper/Ripe Tomato0.583060.293
Mature Eggplant/Ripe Tomato0.509861

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.91329
12-2/M821.27922
12-4/M820.862340.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.38954
3-2/M820.51365
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.80272
4-3/M82N/AN/A
5-3/M822.416440.467
6-2/M823.38136
6-3/M82N/AN/A
7-1/M821.84465
7-2/M82N/AN/A
9-3-2/M821.0957

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.785291
IL2-6/WTpooled0.77464
IL7-5/WTpooled1.425620.792
IL7-3/WTpooled1.153831
IL12-4/WTpooled0.676660.71
IL1-4/WTpooled1.098221
WT/WTpooled0.967311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.959711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.904640.849
DC3000/delta hrp 6h1.169140.857
DC3000/delta hrp 12h1.02851
DC3000/delta hrp 24h0.806990.134

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.250860.047
DC3000 delta B/DC3000 delta AB1.056570.528

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.363840.254
Exp 36h1.502850.489
Exp 60h1.675270.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992741
Var 0h0.979421
Var 12h I row2-row11.226590.201
Var 12h NI row2-row11.59210.649
Var 36h I row2-row10.893021
Var 36h NI row2-row10.9140.706
Var 60h I row2-row10.599950.292
Var 60h NI row2-row10.947631
Time course 0hI-0hNI1.123980.574
Time course 12hI-12hNI1.966640.005
Time course 36hI-36hNI1.750280.006
Time course 60hI-60hNI4.661140.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.875360.246
transgenic ySAMdc/azygous control (breaker)0.984471
transgenic ySAMdc/azygous control (red)1.074630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.025140.656

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.608490.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.505450.096
Manapal/WT (break)0.999051
Manapal/WT (red)0.643660.36