Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.4.1.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	3.9547	0.166
27DAP/17DAP	1.26047	0.766
39DAP/27DAP	0.44192	0.255
41DAP/39DAP	1.26212	0.919
42DAP/41DAP	1.46273	0.681
43DAP/42DAP	1.03587	0.934
47DAP/43DAP	1.2622	0.909
52DAP/47DAP	0.89752	0.698
57DAP/52DAP	1.32207	0.983

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.24274	0.567
17DAP/reference	1.08931
27DAP/reference	2.94265
39DAP/reference	1.52537	0.889
41DAP/reference	1.0968	0.714
42DAP/reference	1.6517	0.001
43DAP/reference	0.82765	0.18
47DAP/reference	1.27087	0.509
52DAP/reference	1.42771	0.149
57DAP/reference	0.87009	0.21

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.78462	0.219
27DAP/17DAP	1.17315	0.735
39DAP/27DAP	1.05329	1
41DAP/39DAP	1.88384	0.763
42DAP/41DAP	1.53711	0.091
43DAP/42DAP	1.23307	1
47DAP/43DAP	2.23818	0.025
52DAP/47DAP	0.85611	0.671
57DAP/52DAP	0.78486	0.541
57DAP/7DAP	0.63899

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.28918	0.393
17DAP/reference	0.75178	0.192
27DAP/reference	1.16802	0.371
39DAP/reference	0.99415	0.64
41DAP/reference	0.9921	0.646
42DAP/reference	1.06711	0.686
43DAP/reference	1.14192	0.802
47DAP/reference	1.21623	0.514
52DAP/reference	1.19313	0.076
57DAP/reference	1.00399	0.67

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.72654	0.17
17DAP/reference	0.39798	0.021
27DAP/reference	0.75264
39DAP/reference	1.13659	1
41DAP/reference	N/A	N/A
42DAP/reference	0.39437
43DAP/reference	1.06512	0.845
47DAP/reference	0.34511
52DAP/reference	0.4282	0.078
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06681	0.616
17DAP/reference	1.01617
27DAP/reference	1.6783	0.531
39DAP/reference	N/A	N/A
41DAP/reference	0.75933	0.064
42DAP/reference	2.43554	0.265
43DAP/reference	N/A	N/A
47DAP/reference	0.51126
52DAP/reference	0.62409	0.061
57DAP/reference	1.33099	0.827

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.93904	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.90742	0.304
51DAP/34DAP	0.65645
52DAP/51DAP	0.84144	1
53DAP/52DAP	1.51912	0.048
55DAP/53DAP	0.91115	0.807
57DAP/55DAP	N/A	N/A
62DAP/57DAP	0.38734
68DAP/62DAP	2.07374	0.017
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.37777

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	2.49742
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.07665
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.04175
IL7-3/WTpooled	0.59373
IL12-4/WTpooled	0.85303	1
IL1-4/WTpooled	1.44176	1
WT/WTpooled	1.39691	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	1.09072	0.73
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.93133	1
Manapal/WT (red)	N/A	N/A