Expression of 1-1-7.4.1.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.9547 | 0.166 |
27DAP/17DAP | 1.26047 | 0.766 |
39DAP/27DAP | 0.44192 | 0.255 |
41DAP/39DAP | 1.26212 | 0.919 |
42DAP/41DAP | 1.46273 | 0.681 |
43DAP/42DAP | 1.03587 | 0.934 |
47DAP/43DAP | 1.2622 | 0.909 |
52DAP/47DAP | 0.89752 | 0.698 |
57DAP/52DAP | 1.32207 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24274 | 0.567 |
17DAP/reference | 1.08931 | |
27DAP/reference | 2.94265 | |
39DAP/reference | 1.52537 | 0.889 |
41DAP/reference | 1.0968 | 0.714 |
42DAP/reference | 1.6517 | 0.001 |
43DAP/reference | 0.82765 | 0.18 |
47DAP/reference | 1.27087 | 0.509 |
52DAP/reference | 1.42771 | 0.149 |
57DAP/reference | 0.87009 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78462 | 0.219 |
27DAP/17DAP | 1.17315 | 0.735 |
39DAP/27DAP | 1.05329 | 1 |
41DAP/39DAP | 1.88384 | 0.763 |
42DAP/41DAP | 1.53711 | 0.091 |
43DAP/42DAP | 1.23307 | 1 |
47DAP/43DAP | 2.23818 | 0.025 |
52DAP/47DAP | 0.85611 | 0.671 |
57DAP/52DAP | 0.78486 | 0.541 |
57DAP/7DAP | 0.63899 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28918 | 0.393 |
17DAP/reference | 0.75178 | 0.192 |
27DAP/reference | 1.16802 | 0.371 |
39DAP/reference | 0.99415 | 0.64 |
41DAP/reference | 0.9921 | 0.646 |
42DAP/reference | 1.06711 | 0.686 |
43DAP/reference | 1.14192 | 0.802 |
47DAP/reference | 1.21623 | 0.514 |
52DAP/reference | 1.19313 | 0.076 |
57DAP/reference | 1.00399 | 0.67 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72654 | 0.17 |
17DAP/reference | 0.39798 | 0.021 |
27DAP/reference | 0.75264 | |
39DAP/reference | 1.13659 | 1 |
41DAP/reference | N/A | N/A |
42DAP/reference | 0.39437 | |
43DAP/reference | 1.06512 | 0.845 |
47DAP/reference | 0.34511 | |
52DAP/reference | 0.4282 | 0.078 |
57DAP/reference | N/A | N/A |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06681 | 0.616 |
17DAP/reference | 1.01617 | |
27DAP/reference | 1.6783 | 0.531 |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.75933 | 0.064 |
42DAP/reference | 2.43554 | 0.265 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.51126 | |
52DAP/reference | 0.62409 | 0.061 |
57DAP/reference | 1.33099 | 0.827 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93904 | 1 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.90742 | 0.304 |
51DAP/34DAP | 0.65645 | |
52DAP/51DAP | 0.84144 | 1 |
53DAP/52DAP | 1.51912 | 0.048 |
55DAP/53DAP | 0.91115 | 0.807 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 0.38734 | |
68DAP/62DAP | 2.07374 | 0.017 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.37777 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.49742 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07665 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.04175 | |
IL7-3/WTpooled | 0.59373 | |
IL12-4/WTpooled | 0.85303 | 1 |
IL1-4/WTpooled | 1.44176 | 1 |
WT/WTpooled | 1.39691 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | 1.09072 | 0.73 |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.93133 | 1 |
Manapal/WT (red) | N/A | N/A |
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