Expression of 1-1-7.4.10.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.17128 | 0.912 |
27DAP/17DAP | 0.58161 | 0.057 |
39DAP/27DAP | 0.90892 | 0.583 |
41DAP/39DAP | 0.86247 | 0.482 |
42DAP/41DAP | 0.91309 | 1 |
43DAP/42DAP | 0.83541 | 0.795 |
47DAP/43DAP | 0.99313 | 0.895 |
52DAP/47DAP | 0.99579 | 0.818 |
57DAP/52DAP | 0.79419 | 0.577 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.36644 | 0.024 |
17DAP/reference | 0.15913 | 0.007 |
27DAP/reference | 0.13884 | 0.007 |
39DAP/reference | 0.25282 | 0.009 |
41DAP/reference | 0.15846 | 0.008 |
42DAP/reference | 0.2302 | 0.001 |
43DAP/reference | 0.16724 | 0.012 |
47DAP/reference | 0.17885 | 0.001 |
52DAP/reference | 0.191 | 0.012 |
57DAP/reference | 0.25198 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24933 | 0.077 |
27DAP/17DAP | 0.87973 | 0.537 |
39DAP/27DAP | 0.51606 | 0.029 |
41DAP/39DAP | 1.16795 | 0.232 |
42DAP/41DAP | 0.97619 | 0.759 |
43DAP/42DAP | 0.58469 | 0.025 |
47DAP/43DAP | 0.85254 | 0.175 |
52DAP/47DAP | 1.14168 | 0.734 |
57DAP/52DAP | 0.86956 | 0.501 |
57DAP/7DAP | 0.44144 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.37321 | 0.039 |
17DAP/reference | 0.28567 | 0.011 |
27DAP/reference | 0.23351 | 0.01 |
39DAP/reference | 0.20133 | 0.011 |
41DAP/reference | 0.86131 | 0.166 |
42DAP/reference | 0.25608 | 0.01 |
43DAP/reference | 0.16937 | 0.009 |
47DAP/reference | 0.23854 | 0.026 |
52DAP/reference | 0.17165 | 0.009 |
57DAP/reference | 0.17805 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.29817 | 0.005 |
17DAP/reference | 0.15669 | 0.003 |
27DAP/reference | 0.13941 | 0.005 |
39DAP/reference | 0.14367 | 0.008 |
41DAP/reference | 0.362 | 0.006 |
42DAP/reference | 0.22925 | 0.011 |
43DAP/reference | 0.25042 | 0.002 |
47DAP/reference | 0.27498 | 0.009 |
52DAP/reference | 0.12543 | 0.003 |
57DAP/reference | 0.15576 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.45992 | 0.05 |
17DAP/reference | 0.64855 | 0.093 |
27DAP/reference | 0.17677 | 0.02 |
39DAP/reference | 0.21113 | 0.006 |
41DAP/reference | 0.22995 | 0.014 |
42DAP/reference | 0.31004 | 0.015 |
43DAP/reference | 0.16555 | 0.012 |
47DAP/reference | 0.11434 | 0.004 |
52DAP/reference | 0.16433 | 0.047 |
57DAP/reference | 0.25488 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.2991 | 0.966 |
26DAP/20DAP | 0.80523 | 0.512 |
34DAP/26DAP | 0.80246 | 0.356 |
51DAP/34DAP | 0.93373 | 0.779 |
52DAP/51DAP | 1.02097 | 0.904 |
53DAP/52DAP | 1.0204 | 1 |
55DAP/53DAP | 1.1651 | 0.348 |
57DAP/55DAP | 1.19342 | 0.525 |
62DAP/57DAP | 0.95231 | 0.871 |
68DAP/62DAP | 1.22189 | 0.737 |
68DAP/14DAP | 0.8095 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.49479 | 0.032 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 3.86559 | 0.016 |
Immature Eggplant/Mature Eggplant | 9.04402 | 0.05 |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18856 | 1 |
1-1-2/M82 | 0.94999 | 1 |
12-2/M82 | 1.00398 | 1 |
12-4/M82 | 1.03661 | 1 |
1-3/M82 | 0.97518 | 1 |
2-1-1/M82 | 1.01404 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.93824 | 1 |
3-2/M82 | 0.89772 | 1 |
4-1-1/M82 | 1.01652 | 1 |
4-1/M82 | 1.01767 | 1 |
4-3-2/M82 | 0.85826 | 1 |
4-3/M82 | 0.54351 | |
5-3/M82 | 0.98724 | 1 |
6-2/M82 | 0.65963 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.31626 | |
7-2/M82 | 0.8983 | 0.599 |
9-3-2/M82 | 0.95874 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.65243 | 0.243 |
IL2-6/WTpooled | 1.93177 | 0.419 |
IL7-5/WTpooled | 1.24154 | 1 |
IL7-3/WTpooled | 0.67446 | 0.293 |
IL12-4/WTpooled | 1.00174 | 1 |
IL1-4/WTpooled | 1.29954 | 1 |
WT/WTpooled | 1.01648 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.81315 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10435 | 0.875 |
DC3000/delta hrp 6h | 1.50398 | 0.392 |
DC3000/delta hrp 12h | 0.50057 | 1 |
DC3000/delta hrp 24h | 2.89423 | 0.029 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.14763 | 0.311 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.11156 | 0.22 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97206 | 1 |
Var 0h | 0.46952 | 1 |
Var 12h I row2-row1 | 0.76407 | 0.338 |
Var 12h NI row2-row1 | 0.95438 | 0.82 |
Var 36h I row2-row1 | 0.84689 | 1 |
Var 36h NI row2-row1 | 1.07172 | 1 |
Var 60h I row2-row1 | 1.4572 | 0.562 |
Var 60h NI row2-row1 | 0.97202 | 1 |
Time course 0hI-0hNI | 0.98638 | 0.962 |
Time course 12hI-12hNI | 0.98758 | 0.953 |
Time course 36hI-36hNI | 0.90826 | 0.179 |
Time course 60hI-60hNI | 0.16202 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.75268 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.03587 | 1 |
transgenic ySAMdc/azygous control (red) | 1.18583 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00157 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.82468 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.76308 | 1 |
Manapal/WT (break) | 0.26193 | 0.333 |
Manapal/WT (red) | N/A | N/A |
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