Expression of 1-1-7.4.10.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.171280.912
27DAP/17DAP0.581610.057
39DAP/27DAP0.908920.583
41DAP/39DAP0.862470.482
42DAP/41DAP0.913091
43DAP/42DAP0.835410.795
47DAP/43DAP0.993130.895
52DAP/47DAP0.995790.818
57DAP/52DAP0.794190.577

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.366440.024
17DAP/reference0.159130.007
27DAP/reference0.138840.007
39DAP/reference0.252820.009
41DAP/reference0.158460.008
42DAP/reference0.23020.001
43DAP/reference0.167240.012
47DAP/reference0.178850.001
52DAP/reference0.1910.012
57DAP/reference0.251980.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.249330.077
27DAP/17DAP0.879730.537
39DAP/27DAP0.516060.029
41DAP/39DAP1.167950.232
42DAP/41DAP0.976190.759
43DAP/42DAP0.584690.025
47DAP/43DAP0.852540.175
52DAP/47DAP1.141680.734
57DAP/52DAP0.869560.501
57DAP/7DAP0.441441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.373210.039
17DAP/reference0.285670.011
27DAP/reference0.233510.01
39DAP/reference0.201330.011
41DAP/reference0.861310.166
42DAP/reference0.256080.01
43DAP/reference0.169370.009
47DAP/reference0.238540.026
52DAP/reference0.171650.009
57DAP/reference0.178050.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.298170.005
17DAP/reference0.156690.003
27DAP/reference0.139410.005
39DAP/reference0.143670.008
41DAP/reference0.3620.006
42DAP/reference0.229250.011
43DAP/reference0.250420.002
47DAP/reference0.274980.009
52DAP/reference0.125430.003
57DAP/reference0.155760.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.459920.05
17DAP/reference0.648550.093
27DAP/reference0.176770.02
39DAP/reference0.211130.006
41DAP/reference0.229950.014
42DAP/reference0.310040.015
43DAP/reference0.165550.012
47DAP/reference0.114340.004
52DAP/reference0.164330.047
57DAP/reference0.254880.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.29910.966
26DAP/20DAP0.805230.512
34DAP/26DAP0.802460.356
51DAP/34DAP0.933730.779
52DAP/51DAP1.020970.904
53DAP/52DAP1.02041
55DAP/53DAP1.16510.348
57DAP/55DAP1.193420.525
62DAP/57DAP0.952310.871
68DAP/62DAP1.221890.737
68DAP/14DAP0.80950.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.494790.032

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato3.865590.016
Immature Eggplant/Mature Eggplant9.044020.05
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.188561
1-1-2/M820.949991
12-2/M821.003981
12-4/M821.036611
1-3/M820.975181
2-1-1/M821.01404
2-1/M82N/AN/A
2-6/M820.938241
3-2/M820.897721
4-1-1/M821.016521
4-1/M821.017671
4-3-2/M820.858261
4-3/M820.54351
5-3/M820.987241
6-2/M820.65963
6-3/M82N/AN/A
7-1/M821.31626
7-2/M820.89830.599
9-3-2/M820.958740.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.652430.243
IL2-6/WTpooled1.931770.419
IL7-5/WTpooled1.241541
IL7-3/WTpooled0.674460.293
IL12-4/WTpooled1.001741
IL1-4/WTpooled1.299541
WT/WTpooled1.016481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.813150.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.104350.875
DC3000/delta hrp 6h1.503980.392
DC3000/delta hrp 12h0.500571
DC3000/delta hrp 24h2.894230.029

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.147630.311

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.111560.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972061
Var 0h0.469521
Var 12h I row2-row10.764070.338
Var 12h NI row2-row10.954380.82
Var 36h I row2-row10.846891
Var 36h NI row2-row11.071721
Var 60h I row2-row11.45720.562
Var 60h NI row2-row10.972021
Time course 0hI-0hNI0.986380.962
Time course 12hI-12hNI0.987580.953
Time course 36hI-36hNI0.908260.179
Time course 60hI-60hNI0.162020.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.752680.246
transgenic ySAMdc/azygous control (breaker)1.035871
transgenic ySAMdc/azygous control (red)1.185830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001571

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.824680.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.763081
Manapal/WT (break)0.261930.333
Manapal/WT (red)N/AN/A