Expression of 1-1-7.4.10.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00986 | 0.927 |
27DAP/17DAP | 1.07034 | 0.872 |
39DAP/27DAP | 1.05603 | 0.907 |
41DAP/39DAP | 1.05073 | 0.624 |
42DAP/41DAP | 0.91291 | 1 |
43DAP/42DAP | 1.01641 | 1 |
47DAP/43DAP | 1.01991 | 0.965 |
52DAP/47DAP | 0.89677 | 0.693 |
57DAP/52DAP | 1.00055 | 0.996 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21557 | 0.101 |
17DAP/reference | 1.07454 | 0.127 |
27DAP/reference | 1.02033 | 0.771 |
39DAP/reference | 1.19674 | 0.318 |
41DAP/reference | 1.0623 | 0.365 |
42DAP/reference | 1.19561 | 0.001 |
43DAP/reference | 1.07813 | 0.142 |
47DAP/reference | 1.16736 | 0.003 |
52DAP/reference | 1.36026 | 0.009 |
57DAP/reference | 1.11687 | 0.433 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91063 | |
27DAP/17DAP | N/A | N/A |
39DAP/27DAP | 1.06015 | 0.596 |
41DAP/39DAP | 0.97739 | 0.973 |
42DAP/41DAP | 1.08739 | 0.927 |
43DAP/42DAP | 1.03072 | 0.554 |
47DAP/43DAP | 0.99217 | 0.983 |
52DAP/47DAP | 0.98744 | 0.935 |
57DAP/52DAP | 0.9881 | 0.784 |
57DAP/7DAP | 0.97121 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34854 | 0.046 |
17DAP/reference | 1.77568 | 0.006 |
27DAP/reference | 1.6624 | 0.006 |
39DAP/reference | 1.96202 | 0.005 |
41DAP/reference | 1.87491 | 0.015 |
42DAP/reference | 2.33813 | 0.006 |
43DAP/reference | 2.49811 | 0.006 |
47DAP/reference | 1.27382 | 0.386 |
52DAP/reference | 1.98772 | 0.007 |
57DAP/reference | 2.0444 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20524 | 0.116 |
17DAP/reference | 1.31465 | 0.032 |
27DAP/reference | 1.32456 | 0.05 |
39DAP/reference | 1.37211 | 0.059 |
41DAP/reference | 1.42324 | 0.027 |
42DAP/reference | 1.29307 | 0.018 |
43DAP/reference | 1.23233 | 0.263 |
47DAP/reference | 1.10169 | 0.024 |
52DAP/reference | 1.45727 | 0.01 |
57DAP/reference | 1.24808 | 0.04 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21211 | 0.086 |
17DAP/reference | 1.22468 | 0.059 |
27DAP/reference | 1.45124 | 0.028 |
39DAP/reference | 1.4072 | 0.01 |
41DAP/reference | 1.3754 | 0.008 |
42DAP/reference | 1.59996 | 0.013 |
43DAP/reference | 1.47994 | 0.007 |
47DAP/reference | 1.02424 | 1 |
52DAP/reference | 1.63967 | 0.079 |
57DAP/reference | 1.37953 | 0.262 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93893 | 0.981 |
26DAP/20DAP | 0.93979 | 0.512 |
34DAP/26DAP | 0.98752 | 0.991 |
51DAP/34DAP | 1.09956 | 0.303 |
52DAP/51DAP | 1.0069 | 0.954 |
53DAP/52DAP | 0.95126 | 0.712 |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | 1.08745 | 0.881 |
62DAP/57DAP | 0.93338 | 0.681 |
68DAP/62DAP | 0.91808 | 0.7 |
68DAP/14DAP | 0.92334 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98735 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.48358 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.76069 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.06567 | 0.439 |
Ripe Pepper/Ripe Tomato | 1.60384 | 1 |
Mature Eggplant/Ripe Tomato | 2.56235 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9837 | 0.961 |
1-1-2/M82 | 0.94435 | 0.958 |
12-2/M82 | 0.94126 | 0.955 |
12-4/M82 | 1.02078 | 1 |
1-3/M82 | 0.95263 | 0.501 |
2-1-1/M82 | 0.79414 | 0.465 |
2-1/M82 | 1.01129 | 1 |
2-6/M82 | 0.9839 | 1 |
3-2/M82 | 1.00375 | 1 |
4-1-1/M82 | 0.9641 | 1 |
4-1/M82 | 1.02925 | 1 |
4-3-2/M82 | 0.92296 | 1 |
4-3/M82 | 0.92176 | 0.72 |
5-3/M82 | 0.99335 | 1 |
6-2/M82 | 0.98659 | 1 |
6-3/M82 | 0.9762 | 1 |
7-1/M82 | 0.98087 | 0.803 |
7-2/M82 | 1.01358 | 1 |
9-3-2/M82 | 0.85655 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.45853 | 0.277 |
IL2-6/WTpooled | 2.06733 | |
IL7-5/WTpooled | 1.3233 | 1 |
IL7-3/WTpooled | 0.89549 | 1 |
IL12-4/WTpooled | 1.02086 | 1 |
IL1-4/WTpooled | 1.13848 | 1 |
WT/WTpooled | 1.08153 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09073 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93803 | 1 |
DC3000/delta hrp 6h | 1.20755 | 1 |
DC3000/delta hrp 12h | 1.07501 | 1 |
DC3000/delta hrp 24h | 1.03226 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.65081 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.27832 | 0.149 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.72802 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02394 | 1 |
Var 0h | 2.58267 | 0.936 |
Var 12h I row2-row1 | 1.18168 | 0.324 |
Var 12h NI row2-row1 | 0.95102 | 0.906 |
Var 36h I row2-row1 | 1.00452 | 1 |
Var 36h NI row2-row1 | 1.0439 | 1 |
Var 60h I row2-row1 | 1.06511 | 1 |
Var 60h NI row2-row1 | 1.20502 | 0.904 |
Time course 0hI-0hNI | 1.02354 | 1 |
Time course 12hI-12hNI | 1.02004 | 0.833 |
Time course 36hI-36hNI | 0.98907 | 0.654 |
Time course 60hI-60hNI | 1.28526 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91159 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 1.13371 | 1 |
transgenic ySAMdc/azygous control (red) | 1.42637 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89622 | 0.049 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82829 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.07479 | 1 |
Manapal/WT (break) | 0.88438 | 0.333 |
Manapal/WT (red) | 1.0577 | 1 |
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