Expression of 1-1-7.4.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009860.927
27DAP/17DAP1.070340.872
39DAP/27DAP1.056030.907
41DAP/39DAP1.050730.624
42DAP/41DAP0.912911
43DAP/42DAP1.016411
47DAP/43DAP1.019910.965
52DAP/47DAP0.896770.693
57DAP/52DAP1.000550.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.215570.101
17DAP/reference1.074540.127
27DAP/reference1.020330.771
39DAP/reference1.196740.318
41DAP/reference1.06230.365
42DAP/reference1.195610.001
43DAP/reference1.078130.142
47DAP/reference1.167360.003
52DAP/reference1.360260.009
57DAP/reference1.116870.433

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.91063
27DAP/17DAPN/AN/A
39DAP/27DAP1.060150.596
41DAP/39DAP0.977390.973
42DAP/41DAP1.087390.927
43DAP/42DAP1.030720.554
47DAP/43DAP0.992170.983
52DAP/47DAP0.987440.935
57DAP/52DAP0.98810.784
57DAP/7DAP0.971211

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.348540.046
17DAP/reference1.775680.006
27DAP/reference1.66240.006
39DAP/reference1.962020.005
41DAP/reference1.874910.015
42DAP/reference2.338130.006
43DAP/reference2.498110.006
47DAP/reference1.273820.386
52DAP/reference1.987720.007
57DAP/reference2.04440.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.205240.116
17DAP/reference1.314650.032
27DAP/reference1.324560.05
39DAP/reference1.372110.059
41DAP/reference1.423240.027
42DAP/reference1.293070.018
43DAP/reference1.232330.263
47DAP/reference1.101690.024
52DAP/reference1.457270.01
57DAP/reference1.248080.04

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.212110.086
17DAP/reference1.224680.059
27DAP/reference1.451240.028
39DAP/reference1.40720.01
41DAP/reference1.37540.008
42DAP/reference1.599960.013
43DAP/reference1.479940.007
47DAP/reference1.024241
52DAP/reference1.639670.079
57DAP/reference1.379530.262

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.938930.981
26DAP/20DAP0.939790.512
34DAP/26DAP0.987520.991
51DAP/34DAP1.099560.303
52DAP/51DAP1.00690.954
53DAP/52DAP0.951260.712
55DAP/53DAPN/AN/A
57DAP/55DAP1.087450.881
62DAP/57DAP0.933380.681
68DAP/62DAP0.918080.7
68DAP/14DAP0.923341

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.987350.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.483580.068
Mature Green Tomato/Ripe Tomato0.760690.411
Immature Eggplant/Mature Eggplant1.065670.439
Ripe Pepper/Ripe Tomato1.603841
Mature Eggplant/Ripe Tomato2.562350.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.98370.961
1-1-2/M820.944350.958
12-2/M820.941260.955
12-4/M821.020781
1-3/M820.952630.501
2-1-1/M820.794140.465
2-1/M821.011291
2-6/M820.98391
3-2/M821.003751
4-1-1/M820.96411
4-1/M821.029251
4-3-2/M820.922961
4-3/M820.921760.72
5-3/M820.993351
6-2/M820.986591
6-3/M820.97621
7-1/M820.980870.803
7-2/M821.013581
9-3-2/M820.856551

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.458530.277
IL2-6/WTpooled2.06733
IL7-5/WTpooled1.32331
IL7-3/WTpooled0.895491
IL12-4/WTpooled1.020861
IL1-4/WTpooled1.138481
WT/WTpooled1.081530.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.090730.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.938031
DC3000/delta hrp 6h1.207551
DC3000/delta hrp 12h1.075011
DC3000/delta hrp 24h1.032260.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.650810.042
DC3000 delta B/DC3000 delta AB1.278320.149

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.728020.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.023941
Var 0h2.582670.936
Var 12h I row2-row11.181680.324
Var 12h NI row2-row10.951020.906
Var 36h I row2-row11.004521
Var 36h NI row2-row11.04391
Var 60h I row2-row11.065111
Var 60h NI row2-row11.205020.904
Time course 0hI-0hNI1.023541
Time course 12hI-12hNI1.020040.833
Time course 36hI-36hNI0.989070.654
Time course 60hI-60hNI1.285260.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.911590.348
transgenic ySAMdc/azygous control (breaker)1.133711
transgenic ySAMdc/azygous control (red)1.426370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.896220.049

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.828290.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.074791
Manapal/WT (break)0.884380.333
Manapal/WT (red)1.05771