Expression of 1-1-7.4.11.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.49865 | 0.142 |
27DAP/17DAP | 0.87253 | 0.683 |
39DAP/27DAP | 1.60748 | 0.473 |
41DAP/39DAP | 0.87336 | 0.552 |
42DAP/41DAP | 2.21972 | 0.026 |
43DAP/42DAP | 1.04154 | 0.931 |
47DAP/43DAP | 1.78814 | 0.269 |
52DAP/47DAP | 0.64807 | 0.191 |
57DAP/52DAP | 1.41566 | 0.944 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04087 | 0.76 |
17DAP/reference | 1.00023 | 0.904 |
27DAP/reference | 0.71515 | 0.012 |
39DAP/reference | 1.05461 | 0.975 |
41DAP/reference | 0.91077 | 0.267 |
42DAP/reference | 0.8416 | 0.002 |
43DAP/reference | 1.53223 | 0.008 |
47DAP/reference | 1.70846 | 0.002 |
52DAP/reference | 0.79912 | 0.077 |
57DAP/reference | 0.93974 | 0.294 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08703 | 0.536 |
27DAP/17DAP | 1.00022 | 1 |
39DAP/27DAP | 1.03588 | 0.751 |
41DAP/39DAP | 1.00965 | 1 |
42DAP/41DAP | 0.99073 | 0.87 |
43DAP/42DAP | 1.01551 | 1 |
47DAP/43DAP | 0.91112 | 0.476 |
52DAP/47DAP | 0.94854 | 0.801 |
57DAP/52DAP | 0.96622 | 0.697 |
57DAP/7DAP | 1.18374 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52074 | 0.025 |
17DAP/reference | 1.04824 | 0.754 |
27DAP/reference | 1.13417 | 0.197 |
39DAP/reference | 1.01475 | 0.745 |
41DAP/reference | 0.84778 | 0.103 |
42DAP/reference | 1.3277 | 0.021 |
43DAP/reference | 1.3604 | 0.014 |
47DAP/reference | 1.03506 | 1 |
52DAP/reference | 1.04479 | 0.563 |
57DAP/reference | 0.87044 | 0.149 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44283 | 0.029 |
17DAP/reference | 1.11697 | 0.05 |
27DAP/reference | 1.10935 | 0.48 |
39DAP/reference | 0.78018 | 0.05 |
41DAP/reference | 0.86004 | 0.237 |
42DAP/reference | 0.99623 | 0.655 |
43DAP/reference | 0.96362 | 0.516 |
47DAP/reference | 1.18581 | 0.482 |
52DAP/reference | 0.66933 | 0.007 |
57DAP/reference | 1.10594 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96094 | 0.489 |
17DAP/reference | 0.89488 | 0.182 |
27DAP/reference | 0.83135 | 0.031 |
39DAP/reference | 1.00967 | 1 |
41DAP/reference | 0.94488 | 0.417 |
42DAP/reference | 1.11916 | 0.3 |
43DAP/reference | 1.03307 | 0.923 |
47DAP/reference | 1.09167 | 0.519 |
52DAP/reference | 1.76866 | 0.081 |
57DAP/reference | 0.83657 | 0.124 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25419 | 0.966 |
26DAP/20DAP | 1.13718 | 0.647 |
34DAP/26DAP | 0.94543 | 0.826 |
51DAP/34DAP | 0.82316 | 0.108 |
52DAP/51DAP | 0.91334 | 1 |
53DAP/52DAP | 0.99591 | 0.99 |
55DAP/53DAP | 0.99137 | 0.886 |
57DAP/55DAP | 1.41475 | 0.311 |
62DAP/57DAP | 1.00587 | 1 |
68DAP/62DAP | 0.73701 | 0.406 |
68DAP/14DAP | 0.68317 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.30918 | 0.049 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.4145 | 0.019 |
Immature Eggplant/Mature Eggplant | 5.77712 | |
Ripe Pepper/Ripe Tomato | 0.12659 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.0974 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.66149 | 0.591 |
1-1-2/M82 | 1.64938 | 1 |
12-2/M82 | 1.29138 | 1 |
12-4/M82 | 1.45136 | 1 |
1-3/M82 | 3.94558 | 0.479 |
2-1-1/M82 | 1.03269 | 0.403 |
2-1/M82 | 0.91091 | 0.322 |
2-6/M82 | 3.03767 | 0.329 |
3-2/M82 | 1.17367 | 0.549 |
4-1-1/M82 | 1.41992 | 1 |
4-1/M82 | 1.94698 | 1 |
4-3-2/M82 | 3.81156 | 0.241 |
4-3/M82 | 4.36804 | 0.268 |
5-3/M82 | 0.51314 | 0.49 |
6-2/M82 | 4.4217 | 0.212 |
6-3/M82 | 1.35806 | 1 |
7-1/M82 | 1.20196 | |
7-2/M82 | 2.27959 | |
9-3-2/M82 | 2.00546 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.98603 | 1 |
IL2-6/WTpooled | 1.3386 | 0.395 |
IL7-5/WTpooled | 0.84904 | 1 |
IL7-3/WTpooled | 0.85605 | 0.418 |
IL12-4/WTpooled | 1.09246 | 0.557 |
IL1-4/WTpooled | 1.16921 | 1 |
WT/WTpooled | 1.0141 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02243 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.2644 | 0.914 |
DC3000/delta hrp 6h | 1.03219 | 0.95 |
DC3000/delta hrp 12h | 1.05059 | 1 |
DC3000/delta hrp 24h | 1.21804 | 0.182 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19168 | 0.208 |
DC3000 delta B/DC3000 delta AB | 1.18448 | 0.234 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.29654 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 2.28832 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00483 | 1 |
Var 0h | 1.23301 | 0.374 |
Var 12h I row2-row1 | 0.93762 | 0.77 |
Var 12h NI row2-row1 | 1.18177 | 0.235 |
Var 36h I row2-row1 | 0.8735 | 0.805 |
Var 36h NI row2-row1 | 1.11833 | 1 |
Var 60h I row2-row1 | 0.97442 | 0.952 |
Var 60h NI row2-row1 | 1.09844 | 0.904 |
Time course 0hI-0hNI | 1.03311 | 0.852 |
Time course 12hI-12hNI | 1.0877 | 0.201 |
Time course 36hI-36hNI | 1.18115 | 0.019 |
Time course 60hI-60hNI | 1.65745 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.84084 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.79166 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.33301 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01651 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9148 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.21149 | 0.172 |
Manapal/WT (break) | 0.58967 | 0.333 |
Manapal/WT (red) | 0.66419 | 0.181 |
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