Expression of 1-1-7.4.11.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.498650.142
27DAP/17DAP0.872530.683
39DAP/27DAP1.607480.473
41DAP/39DAP0.873360.552
42DAP/41DAP2.219720.026
43DAP/42DAP1.041540.931
47DAP/43DAP1.788140.269
52DAP/47DAP0.648070.191
57DAP/52DAP1.415660.944

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.040870.76
17DAP/reference1.000230.904
27DAP/reference0.715150.012
39DAP/reference1.054610.975
41DAP/reference0.910770.267
42DAP/reference0.84160.002
43DAP/reference1.532230.008
47DAP/reference1.708460.002
52DAP/reference0.799120.077
57DAP/reference0.939740.294

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.087030.536
27DAP/17DAP1.000221
39DAP/27DAP1.035880.751
41DAP/39DAP1.009651
42DAP/41DAP0.990730.87
43DAP/42DAP1.015511
47DAP/43DAP0.911120.476
52DAP/47DAP0.948540.801
57DAP/52DAP0.966220.697
57DAP/7DAP1.183740.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.520740.025
17DAP/reference1.048240.754
27DAP/reference1.134170.197
39DAP/reference1.014750.745
41DAP/reference0.847780.103
42DAP/reference1.32770.021
43DAP/reference1.36040.014
47DAP/reference1.035061
52DAP/reference1.044790.563
57DAP/reference0.870440.149

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.442830.029
17DAP/reference1.116970.05
27DAP/reference1.109350.48
39DAP/reference0.780180.05
41DAP/reference0.860040.237
42DAP/reference0.996230.655
43DAP/reference0.963620.516
47DAP/reference1.185810.482
52DAP/reference0.669330.007
57DAP/reference1.105940.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960940.489
17DAP/reference0.894880.182
27DAP/reference0.831350.031
39DAP/reference1.009671
41DAP/reference0.944880.417
42DAP/reference1.119160.3
43DAP/reference1.033070.923
47DAP/reference1.091670.519
52DAP/reference1.768660.081
57DAP/reference0.836570.124

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.254190.966
26DAP/20DAP1.137180.647
34DAP/26DAP0.945430.826
51DAP/34DAP0.823160.108
52DAP/51DAP0.913341
53DAP/52DAP0.995910.99
55DAP/53DAP0.991370.886
57DAP/55DAP1.414750.311
62DAP/57DAP1.005871
68DAP/62DAP0.737010.406
68DAP/14DAP0.683170.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.309180.049

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.41450.019
Immature Eggplant/Mature Eggplant5.77712
Ripe Pepper/Ripe Tomato0.126590.224
Mature Eggplant/Ripe Tomato0.09741

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.661490.591
1-1-2/M821.649381
12-2/M821.291381
12-4/M821.451361
1-3/M823.945580.479
2-1-1/M821.032690.403
2-1/M820.910910.322
2-6/M823.037670.329
3-2/M821.173670.549
4-1-1/M821.419921
4-1/M821.946981
4-3-2/M823.811560.241
4-3/M824.368040.268
5-3/M820.513140.49
6-2/M824.42170.212
6-3/M821.358061
7-1/M821.20196
7-2/M822.27959
9-3-2/M822.00546

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.986031
IL2-6/WTpooled1.33860.395
IL7-5/WTpooled0.849041
IL7-3/WTpooled0.856050.418
IL12-4/WTpooled1.092460.557
IL1-4/WTpooled1.169211
WT/WTpooled1.01411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022431

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.26440.914
DC3000/delta hrp 6h1.032190.95
DC3000/delta hrp 12h1.050591
DC3000/delta hrp 24h1.218040.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.191680.208
DC3000 delta B/DC3000 delta AB1.184480.234

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.296541
Exp 36hN/AN/A
Exp 60h2.288320.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004831
Var 0h1.233010.374
Var 12h I row2-row10.937620.77
Var 12h NI row2-row11.181770.235
Var 36h I row2-row10.87350.805
Var 36h NI row2-row11.118331
Var 60h I row2-row10.974420.952
Var 60h NI row2-row11.098440.904
Time course 0hI-0hNI1.033110.852
Time course 12hI-12hNI1.08770.201
Time course 36hI-36hNI1.181150.019
Time course 60hI-60hNI1.657450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.840840.348
transgenic ySAMdc/azygous control (breaker)0.791660.251
transgenic ySAMdc/azygous control (red)1.333010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016510.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.91480.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.211490.172
Manapal/WT (break)0.589670.333
Manapal/WT (red)0.664190.181