Expression of 1-1-7.4.11.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.016110.801
27DAP/17DAP1.132790.845
39DAP/27DAP0.957160.67
41DAP/39DAP1.450080.357
42DAP/41DAP1.054760.994
43DAP/42DAP0.882280.807
47DAP/43DAP0.777890.355
52DAP/47DAP1.588920.468
57DAP/52DAP0.817530.754

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.05090.846
17DAP/reference1.094440.112
27DAP/reference0.965440.552
39DAP/reference1.0320.664
41DAP/reference1.114060.038
42DAP/reference0.982650.348
43DAP/reference1.07570.425
47DAP/reference0.929140.071
52DAP/reference0.834780.033
57DAP/reference0.846960.024

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.852730.289
27DAP/17DAP0.884010.295
39DAP/27DAP1.107680.505
41DAP/39DAP0.973860.973
42DAP/41DAP0.995030.835
43DAP/42DAP1.180360.413
47DAP/43DAP0.902620.29
52DAP/47DAP1.061220.844
57DAP/52DAP0.85530.289
57DAP/7DAP1.285651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.848780.122
17DAP/reference0.741930.014
27DAP/reference0.731850.01
39DAP/reference0.76050.011
41DAP/reference0.760010.028
42DAP/reference0.707520.01
43DAP/reference0.65780.011
47DAP/reference0.830870.066
52DAP/reference0.689510.017
57DAP/reference0.723150.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08660.582
17DAP/reference1.100040.285
27DAP/reference0.929020.327
39DAP/reference0.910510.235
41DAP/reference0.902360.237
42DAP/reference1.007670.655
43DAP/reference1.21660.069
47DAP/reference1.004330.833
52DAP/reference0.941390.121
57DAP/reference1.380240.15

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763930.045
17DAP/reference1.011410.87
27DAP/reference0.705920.042
39DAP/reference0.763840.037
41DAP/reference0.775340.018
42DAP/reference0.753990.016
43DAP/reference0.76170.098
47DAP/reference0.99030.593
52DAP/reference0.730530.123
57DAP/reference0.6910.041

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.811330.44
26DAP/20DAP0.898711
34DAP/26DAP0.771460.228
51DAP/34DAP0.787120.323
52DAP/51DAP0.964561
53DAP/52DAP0.955140.807
55DAP/53DAP1.011531
57DAP/55DAP1.688330.474
62DAP/57DAP1.195350.35
68DAP/62DAP1.161680.813
68DAP/14DAP0.755470.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.97920.635

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.05943
Mature Green Tomato/Ripe Tomato1.024060.715
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.019131
1-1-2/M820.97961
12-2/M821.153341
12-4/M820.867071
1-3/M820.957571
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.076590.695
3-2/M820.88918
4-1-1/M821.078721
4-1/M820.890071
4-3-2/M820.914721
4-3/M820.76007
5-3/M820.971321
6-2/M820.8393
6-3/M82N/AN/A
7-1/M820.98890.509
7-2/M821.007521
9-3-2/M820.892951

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.946121
IL2-6/WTpooled1.165670.788
IL7-5/WTpooled1.51260.635
IL7-3/WTpooled1.158911
IL12-4/WTpooled1.204890.553
IL1-4/WTpooled0.785750.422
WT/WTpooled1.050661

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.985291

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.064740.894
DC3000/delta hrp 6h1.007910.95
DC3000/delta hrp 12h1.018321
DC3000/delta hrp 24h1.219370.067

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.675771
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.987381
Var 0h0.672161
Var 12h I row2-row11.143110.222
Var 12h NI row2-row10.751340.494
Var 36h I row2-row10.649790.805
Var 36h NI row2-row10.937160.706
Var 60h I row2-row11.211410.543
Var 60h NI row2-row11.180740.904
Time course 0hI-0hNI1.091770.574
Time course 12hI-12hNI0.988120.931
Time course 36hI-36hNI0.899030.086
Time course 60hI-60hNI1.07590.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.343490.863
transgenic ySAMdc/azygous control (breaker)3.374791
transgenic ySAMdc/azygous control (red)1.178630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010180.556

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.772940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.027181
Manapal/WT (red)1.08651