Expression of 1-1-7.4.11.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01611 | 0.801 |
27DAP/17DAP | 1.13279 | 0.845 |
39DAP/27DAP | 0.95716 | 0.67 |
41DAP/39DAP | 1.45008 | 0.357 |
42DAP/41DAP | 1.05476 | 0.994 |
43DAP/42DAP | 0.88228 | 0.807 |
47DAP/43DAP | 0.77789 | 0.355 |
52DAP/47DAP | 1.58892 | 0.468 |
57DAP/52DAP | 0.81753 | 0.754 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0509 | 0.846 |
17DAP/reference | 1.09444 | 0.112 |
27DAP/reference | 0.96544 | 0.552 |
39DAP/reference | 1.032 | 0.664 |
41DAP/reference | 1.11406 | 0.038 |
42DAP/reference | 0.98265 | 0.348 |
43DAP/reference | 1.0757 | 0.425 |
47DAP/reference | 0.92914 | 0.071 |
52DAP/reference | 0.83478 | 0.033 |
57DAP/reference | 0.84696 | 0.024 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85273 | 0.289 |
27DAP/17DAP | 0.88401 | 0.295 |
39DAP/27DAP | 1.10768 | 0.505 |
41DAP/39DAP | 0.97386 | 0.973 |
42DAP/41DAP | 0.99503 | 0.835 |
43DAP/42DAP | 1.18036 | 0.413 |
47DAP/43DAP | 0.90262 | 0.29 |
52DAP/47DAP | 1.06122 | 0.844 |
57DAP/52DAP | 0.8553 | 0.289 |
57DAP/7DAP | 1.28565 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84878 | 0.122 |
17DAP/reference | 0.74193 | 0.014 |
27DAP/reference | 0.73185 | 0.01 |
39DAP/reference | 0.7605 | 0.011 |
41DAP/reference | 0.76001 | 0.028 |
42DAP/reference | 0.70752 | 0.01 |
43DAP/reference | 0.6578 | 0.011 |
47DAP/reference | 0.83087 | 0.066 |
52DAP/reference | 0.68951 | 0.017 |
57DAP/reference | 0.72315 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0866 | 0.582 |
17DAP/reference | 1.10004 | 0.285 |
27DAP/reference | 0.92902 | 0.327 |
39DAP/reference | 0.91051 | 0.235 |
41DAP/reference | 0.90236 | 0.237 |
42DAP/reference | 1.00767 | 0.655 |
43DAP/reference | 1.2166 | 0.069 |
47DAP/reference | 1.00433 | 0.833 |
52DAP/reference | 0.94139 | 0.121 |
57DAP/reference | 1.38024 | 0.15 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76393 | 0.045 |
17DAP/reference | 1.01141 | 0.87 |
27DAP/reference | 0.70592 | 0.042 |
39DAP/reference | 0.76384 | 0.037 |
41DAP/reference | 0.77534 | 0.018 |
42DAP/reference | 0.75399 | 0.016 |
43DAP/reference | 0.7617 | 0.098 |
47DAP/reference | 0.9903 | 0.593 |
52DAP/reference | 0.73053 | 0.123 |
57DAP/reference | 0.691 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.81133 | 0.44 |
26DAP/20DAP | 0.89871 | 1 |
34DAP/26DAP | 0.77146 | 0.228 |
51DAP/34DAP | 0.78712 | 0.323 |
52DAP/51DAP | 0.96456 | 1 |
53DAP/52DAP | 0.95514 | 0.807 |
55DAP/53DAP | 1.01153 | 1 |
57DAP/55DAP | 1.68833 | 0.474 |
62DAP/57DAP | 1.19535 | 0.35 |
68DAP/62DAP | 1.16168 | 0.813 |
68DAP/14DAP | 0.75547 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9792 | 0.635 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.05943 | |
Mature Green Tomato/Ripe Tomato | 1.02406 | 0.715 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01913 | 1 |
1-1-2/M82 | 0.9796 | 1 |
12-2/M82 | 1.15334 | 1 |
12-4/M82 | 0.86707 | 1 |
1-3/M82 | 0.95757 | 1 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07659 | 0.695 |
3-2/M82 | 0.88918 | |
4-1-1/M82 | 1.07872 | 1 |
4-1/M82 | 0.89007 | 1 |
4-3-2/M82 | 0.91472 | 1 |
4-3/M82 | 0.76007 | |
5-3/M82 | 0.97132 | 1 |
6-2/M82 | 0.8393 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.9889 | 0.509 |
7-2/M82 | 1.00752 | 1 |
9-3-2/M82 | 0.89295 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94612 | 1 |
IL2-6/WTpooled | 1.16567 | 0.788 |
IL7-5/WTpooled | 1.5126 | 0.635 |
IL7-3/WTpooled | 1.15891 | 1 |
IL12-4/WTpooled | 1.20489 | 0.553 |
IL1-4/WTpooled | 0.78575 | 0.422 |
WT/WTpooled | 1.05066 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98529 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06474 | 0.894 |
DC3000/delta hrp 6h | 1.00791 | 0.95 |
DC3000/delta hrp 12h | 1.01832 | 1 |
DC3000/delta hrp 24h | 1.21937 | 0.067 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.67577 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98738 | 1 |
Var 0h | 0.67216 | 1 |
Var 12h I row2-row1 | 1.14311 | 0.222 |
Var 12h NI row2-row1 | 0.75134 | 0.494 |
Var 36h I row2-row1 | 0.64979 | 0.805 |
Var 36h NI row2-row1 | 0.93716 | 0.706 |
Var 60h I row2-row1 | 1.21141 | 0.543 |
Var 60h NI row2-row1 | 1.18074 | 0.904 |
Time course 0hI-0hNI | 1.09177 | 0.574 |
Time course 12hI-12hNI | 0.98812 | 0.931 |
Time course 36hI-36hNI | 0.89903 | 0.086 |
Time course 60hI-60hNI | 1.0759 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.34349 | 0.863 |
transgenic ySAMdc/azygous control (breaker) | 3.37479 | 1 |
transgenic ySAMdc/azygous control (red) | 1.17863 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01018 | 0.556 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77294 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.02718 | 1 |
Manapal/WT (red) | 1.0865 | 1 |
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