Expression of 1-1-7.4.12.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94396 | 0.689 |
27DAP/17DAP | 1.1239 | 0.849 |
39DAP/27DAP | 0.92485 | 0.549 |
41DAP/39DAP | 1.1932 | 0.494 |
42DAP/41DAP | 0.81377 | 0.774 |
43DAP/42DAP | 1.05708 | 1 |
47DAP/43DAP | 0.86099 | 0.562 |
52DAP/47DAP | 0.84863 | 0.607 |
57DAP/52DAP | 0.99211 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.83086 | 0.007 |
17DAP/reference | 0.96745 | 0.597 |
27DAP/reference | 0.74462 | 0.035 |
39DAP/reference | 0.92535 | 0.261 |
41DAP/reference | 0.93825 | 0.434 |
42DAP/reference | 0.91553 | 0.107 |
43DAP/reference | 0.91231 | 0.36 |
47DAP/reference | 0.83191 | 0.046 |
52DAP/reference | 0.81263 | 0.105 |
57DAP/reference | 0.75493 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.70172 | 0.085 |
27DAP/17DAP | 1.09343 | 0.887 |
39DAP/27DAP | 0.68957 | 0.039 |
41DAP/39DAP | 1.05269 | 1 |
42DAP/41DAP | 1.13003 | 0.852 |
43DAP/42DAP | 1.20254 | 0.212 |
47DAP/43DAP | 0.83974 | 0.305 |
52DAP/47DAP | 0.94218 | 0.839 |
57DAP/52DAP | 1.84207 | 0.424 |
57DAP/7DAP | 0.76541 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43471 | 0.037 |
17DAP/reference | 1.14477 | 0.399 |
27DAP/reference | 1.10487 | 0.453 |
39DAP/reference | 0.91273 | 0.198 |
41DAP/reference | 1.03103 | 0.848 |
42DAP/reference | 1.10308 | 0.686 |
43DAP/reference | 0.96529 | 0.403 |
47DAP/reference | 0.92619 | 0.293 |
52DAP/reference | 0.86211 | 0.097 |
57DAP/reference | 0.90887 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50081 | 0.038 |
17DAP/reference | 1.28654 | 0.21 |
27DAP/reference | 1.32267 | 0.045 |
39DAP/reference | 0.97423 | 0.526 |
41DAP/reference | 1.15083 | 0.327 |
42DAP/reference | 1.02443 | 1 |
43DAP/reference | 1.19179 | 0.044 |
47DAP/reference | 0.94222 | 0.137 |
52DAP/reference | 0.80719 | 0.014 |
57DAP/reference | 0.856 | 0.18 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45237 | 0.02 |
17DAP/reference | 1.08116 | 0.558 |
27DAP/reference | 1.06258 | 0.644 |
39DAP/reference | 0.83562 | 0.028 |
41DAP/reference | 0.93093 | 0.293 |
42DAP/reference | 1.06972 | 0.877 |
43DAP/reference | 1.0034 | 0.685 |
47DAP/reference | 0.90454 | 0.249 |
52DAP/reference | 0.7869 | 0.223 |
57DAP/reference | 0.98495 | 0.623 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.91993 | 0.56 |
26DAP/20DAP | 1.81239 | 0.112 |
34DAP/26DAP | 0.88135 | 0.763 |
51DAP/34DAP | 1.13772 | 0.936 |
52DAP/51DAP | 0.81264 | 1 |
53DAP/52DAP | 0.65249 | 0.078 |
55DAP/53DAP | 1.00694 | 0.775 |
57DAP/55DAP | 1.10116 | 0.865 |
62DAP/57DAP | 0.99623 | 1 |
68DAP/62DAP | 0.81006 | 0.505 |
68DAP/14DAP | 0.85573 | 0.078 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11129 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.86516 | 0.351 |
Mature Green Tomato/Ripe Tomato | 1.70185 | 0.023 |
Immature Eggplant/Mature Eggplant | 1.08891 | 0.23 |
Ripe Pepper/Ripe Tomato | 1.34975 | 1 |
Mature Eggplant/Ripe Tomato | 1.54193 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.18085 | 0.742 |
1-1-2/M82 | 1.11576 | 1 |
12-2/M82 | 0.82588 | |
12-4/M82 | 0.85393 | |
1-3/M82 | 0.90775 | |
2-1-1/M82 | 1.21463 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.16531 | 0.385 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.7694 | 0.735 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 2.21847 | 0.268 |
5-3/M82 | 1.03749 | 1 |
6-2/M82 | 1.14198 | 1 |
6-3/M82 | 1.04228 | 1 |
7-1/M82 | 0.93726 | |
7-2/M82 | 1.42603 | 0.291 |
9-3-2/M82 | 1.5064 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05972 | |
IL2-6/WTpooled | 1.05897 | 1 |
IL7-5/WTpooled | 0.92541 | |
IL7-3/WTpooled | 0.85867 | 0.31 |
IL12-4/WTpooled | 0.69596 | 0.543 |
IL1-4/WTpooled | 0.96318 | 1 |
WT/WTpooled | 1.02078 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.39994 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96715 | 1 |
DC3000/delta hrp 6h | 1.14665 | 1 |
DC3000/delta hrp 12h | 1.18717 | 1 |
DC3000/delta hrp 24h | 1.21431 | 0.37 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.62713 | |
DC3000 delta B/DC3000 delta AB | 0.90246 | 0.575 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96412 | 1 |
Exp 36h | 1.1035 | 1 |
Exp 60h | 0.89996 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99296 | 1 |
Var 0h | 0.50786 | 1 |
Var 12h I row2-row1 | 0.87423 | 0.338 |
Var 12h NI row2-row1 | 1.18737 | 0.235 |
Var 36h I row2-row1 | 0.96095 | 0.203 |
Var 36h NI row2-row1 | 0.85077 | 0.432 |
Var 60h I row2-row1 | 0.87217 | 0.832 |
Var 60h NI row2-row1 | 0.6824 | 0.904 |
Time course 0hI-0hNI | 0.84698 | 0.16 |
Time course 12hI-12hNI | 1.04405 | 0.774 |
Time course 36hI-36hNI | 1.0295 | 0.798 |
Time course 60hI-60hNI | 1.06084 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99879 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.79776 | 0.15 |
transgenic ySAMdc/azygous control (red) | 0.90031 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98453 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01995 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91583 | 1 |
Manapal/WT (break) | 0.80048 | 1 |
Manapal/WT (red) | 1.34859 | 0.413 |
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