Expression of 1-1-7.4.12.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.943960.689
27DAP/17DAP1.12390.849
39DAP/27DAP0.924850.549
41DAP/39DAP1.19320.494
42DAP/41DAP0.813770.774
43DAP/42DAP1.057081
47DAP/43DAP0.860990.562
52DAP/47DAP0.848630.607
57DAP/52DAP0.992110.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.830860.007
17DAP/reference0.967450.597
27DAP/reference0.744620.035
39DAP/reference0.925350.261
41DAP/reference0.938250.434
42DAP/reference0.915530.107
43DAP/reference0.912310.36
47DAP/reference0.831910.046
52DAP/reference0.812630.105
57DAP/reference0.754930.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.701720.085
27DAP/17DAP1.093430.887
39DAP/27DAP0.689570.039
41DAP/39DAP1.052691
42DAP/41DAP1.130030.852
43DAP/42DAP1.202540.212
47DAP/43DAP0.839740.305
52DAP/47DAP0.942180.839
57DAP/52DAP1.842070.424
57DAP/7DAP0.765411

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.434710.037
17DAP/reference1.144770.399
27DAP/reference1.104870.453
39DAP/reference0.912730.198
41DAP/reference1.031030.848
42DAP/reference1.103080.686
43DAP/reference0.965290.403
47DAP/reference0.926190.293
52DAP/reference0.862110.097
57DAP/reference0.908870.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.500810.038
17DAP/reference1.286540.21
27DAP/reference1.322670.045
39DAP/reference0.974230.526
41DAP/reference1.150830.327
42DAP/reference1.024431
43DAP/reference1.191790.044
47DAP/reference0.942220.137
52DAP/reference0.807190.014
57DAP/reference0.8560.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.452370.02
17DAP/reference1.081160.558
27DAP/reference1.062580.644
39DAP/reference0.835620.028
41DAP/reference0.930930.293
42DAP/reference1.069720.877
43DAP/reference1.00340.685
47DAP/reference0.904540.249
52DAP/reference0.78690.223
57DAP/reference0.984950.623

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.919930.56
26DAP/20DAP1.812390.112
34DAP/26DAP0.881350.763
51DAP/34DAP1.137720.936
52DAP/51DAP0.812641
53DAP/52DAP0.652490.078
55DAP/53DAP1.006940.775
57DAP/55DAP1.101160.865
62DAP/57DAP0.996231
68DAP/62DAP0.810060.505
68DAP/14DAP0.855730.078

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.111290.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.865160.351
Mature Green Tomato/Ripe Tomato1.701850.023
Immature Eggplant/Mature Eggplant1.088910.23
Ripe Pepper/Ripe Tomato1.349751
Mature Eggplant/Ripe Tomato1.541931

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.180850.742
1-1-2/M821.115761
12-2/M820.82588
12-4/M820.85393
1-3/M820.90775
2-1-1/M821.21463
2-1/M82N/AN/A
2-6/M821.165310.385
3-2/M82N/AN/A
4-1-1/M821.76940.735
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M822.218470.268
5-3/M821.037491
6-2/M821.141981
6-3/M821.042281
7-1/M820.93726
7-2/M821.426030.291
9-3-2/M821.5064

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.05972
IL2-6/WTpooled1.058971
IL7-5/WTpooled0.92541
IL7-3/WTpooled0.858670.31
IL12-4/WTpooled0.695960.543
IL1-4/WTpooled0.963181
WT/WTpooled1.020781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.399940.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.967151
DC3000/delta hrp 6h1.146651
DC3000/delta hrp 12h1.187171
DC3000/delta hrp 24h1.214310.37

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.62713
DC3000 delta B/DC3000 delta AB0.902460.575

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.964121
Exp 36h1.10351
Exp 60h0.899960.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992961
Var 0h0.507861
Var 12h I row2-row10.874230.338
Var 12h NI row2-row11.187370.235
Var 36h I row2-row10.960950.203
Var 36h NI row2-row10.850770.432
Var 60h I row2-row10.872170.832
Var 60h NI row2-row10.68240.904
Time course 0hI-0hNI0.846980.16
Time course 12hI-12hNI1.044050.774
Time course 36hI-36hNI1.02950.798
Time course 60hI-60hNI1.060840.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.998791
transgenic ySAMdc/azygous control (breaker)0.797760.15
transgenic ySAMdc/azygous control (red)0.900311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.984530.534

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.019951

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.915831
Manapal/WT (break)0.800481
Manapal/WT (red)1.348590.413