Expression of 1-1-7.4.12.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.798660.025
27DAP/17DAP1.174550.881
39DAP/27DAP1.362130.501
41DAP/39DAP2.704440.67
42DAP/41DAP1.078470.978
43DAP/42DAP0.728530.554
47DAP/43DAP1.097250.95
52DAP/47DAP0.885150.761
57DAP/52DAP0.891030.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.780090.182
17DAP/reference0.772720.031
27DAP/reference0.752960.187
39DAP/reference1.234380.301
41DAP/reference0.839190.201
42DAP/reference1.240360.098
43DAP/reference0.997190.745
47DAP/reference1.108270.593
52DAP/reference1.123270.73
57DAP/reference1.311530.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.612230.27
27DAP/17DAP1.142980.506
39DAP/27DAP3.72463
41DAP/39DAP1.40139
42DAP/41DAP0.784060.273
43DAP/42DAP0.99502
47DAP/43DAP0.885730.886
52DAP/47DAP1.118530.987
57DAP/52DAP1.473870.154
57DAP/7DAP0.27413

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.920720.296
17DAP/reference1.027530.971
27DAP/reference1.19150.131
39DAP/reference1.17650.297
41DAP/reference1.065970.723
42DAP/reference1.114250.534
43DAP/reference0.911050.21
47DAP/reference1.020131
52DAP/reference1.020130.732
57DAP/reference1.090380.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.229190.863
17DAP/reference0.966240.594
27DAP/reference0.967810.619
39DAP/reference1.150690.255
41DAP/reference0.864590.199
42DAP/reference0.995370.655
43DAP/reference1.053870.89
47DAP/reference0.935080.359
52DAP/reference1.21740.343
57DAP/reference1.139040.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.898950.169
17DAP/reference1.270290.105
27DAP/reference1.007240.843
39DAP/reference1.084610.275
41DAP/reference0.977890.618
42DAP/reference0.997741
43DAP/reference1.40760.142
47DAP/reference1.51360.077
52DAP/reference1.228840.448
57DAP/reference1.091180.625

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.525680.966
26DAP/20DAPN/AN/A
34DAP/26DAP1.211721
51DAP/34DAP0.905870.727
52DAP/51DAP0.708381
53DAP/52DAP2.252270.58
55DAP/53DAP0.78220.746
57DAP/55DAP1.602130.793
62DAP/57DAP1.102970.902
68DAP/62DAP1.506460.869
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.824750.105

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.469331
IL7-5/WTpooled0.58445
IL7-3/WTpooled0.790840.293
IL12-4/WTpooled0.984381
IL1-4/WTpooled1.09852
WT/WTpooled0.917991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h2.49655
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.854980.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.001451
Manapal/WT (red)N/AN/A