Expression of 1-1-7.4.12.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.79866 | 0.025 |
27DAP/17DAP | 1.17455 | 0.881 |
39DAP/27DAP | 1.36213 | 0.501 |
41DAP/39DAP | 2.70444 | 0.67 |
42DAP/41DAP | 1.07847 | 0.978 |
43DAP/42DAP | 0.72853 | 0.554 |
47DAP/43DAP | 1.09725 | 0.95 |
52DAP/47DAP | 0.88515 | 0.761 |
57DAP/52DAP | 0.89103 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78009 | 0.182 |
17DAP/reference | 0.77272 | 0.031 |
27DAP/reference | 0.75296 | 0.187 |
39DAP/reference | 1.23438 | 0.301 |
41DAP/reference | 0.83919 | 0.201 |
42DAP/reference | 1.24036 | 0.098 |
43DAP/reference | 0.99719 | 0.745 |
47DAP/reference | 1.10827 | 0.593 |
52DAP/reference | 1.12327 | 0.73 |
57DAP/reference | 1.31153 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.61223 | 0.27 |
27DAP/17DAP | 1.14298 | 0.506 |
39DAP/27DAP | 3.72463 | |
41DAP/39DAP | 1.40139 | |
42DAP/41DAP | 0.78406 | 0.273 |
43DAP/42DAP | 0.99502 | |
47DAP/43DAP | 0.88573 | 0.886 |
52DAP/47DAP | 1.11853 | 0.987 |
57DAP/52DAP | 1.47387 | 0.154 |
57DAP/7DAP | 0.27413 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92072 | 0.296 |
17DAP/reference | 1.02753 | 0.971 |
27DAP/reference | 1.1915 | 0.131 |
39DAP/reference | 1.1765 | 0.297 |
41DAP/reference | 1.06597 | 0.723 |
42DAP/reference | 1.11425 | 0.534 |
43DAP/reference | 0.91105 | 0.21 |
47DAP/reference | 1.02013 | 1 |
52DAP/reference | 1.02013 | 0.732 |
57DAP/reference | 1.09038 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22919 | 0.863 |
17DAP/reference | 0.96624 | 0.594 |
27DAP/reference | 0.96781 | 0.619 |
39DAP/reference | 1.15069 | 0.255 |
41DAP/reference | 0.86459 | 0.199 |
42DAP/reference | 0.99537 | 0.655 |
43DAP/reference | 1.05387 | 0.89 |
47DAP/reference | 0.93508 | 0.359 |
52DAP/reference | 1.2174 | 0.343 |
57DAP/reference | 1.13904 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89895 | 0.169 |
17DAP/reference | 1.27029 | 0.105 |
27DAP/reference | 1.00724 | 0.843 |
39DAP/reference | 1.08461 | 0.275 |
41DAP/reference | 0.97789 | 0.618 |
42DAP/reference | 0.99774 | 1 |
43DAP/reference | 1.4076 | 0.142 |
47DAP/reference | 1.5136 | 0.077 |
52DAP/reference | 1.22884 | 0.448 |
57DAP/reference | 1.09118 | 0.625 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.52568 | 0.966 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 1.21172 | 1 |
51DAP/34DAP | 0.90587 | 0.727 |
52DAP/51DAP | 0.70838 | 1 |
53DAP/52DAP | 2.25227 | 0.58 |
55DAP/53DAP | 0.7822 | 0.746 |
57DAP/55DAP | 1.60213 | 0.793 |
62DAP/57DAP | 1.10297 | 0.902 |
68DAP/62DAP | 1.50646 | 0.869 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.82475 | 0.105 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.46933 | 1 |
IL7-5/WTpooled | 0.58445 | |
IL7-3/WTpooled | 0.79084 | 0.293 |
IL12-4/WTpooled | 0.98438 | 1 |
IL1-4/WTpooled | 1.09852 | |
WT/WTpooled | 0.91799 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 2.49655 | |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.85498 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.00145 | 1 |
Manapal/WT (red) | N/A | N/A |
|
|