Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.4.12.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.79866	0.025
27DAP/17DAP	1.17455	0.881
39DAP/27DAP	1.36213	0.501
41DAP/39DAP	2.70444	0.67
42DAP/41DAP	1.07847	0.978
43DAP/42DAP	0.72853	0.554
47DAP/43DAP	1.09725	0.95
52DAP/47DAP	0.88515	0.761
57DAP/52DAP	0.89103	0.85

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.78009	0.182
17DAP/reference	0.77272	0.031
27DAP/reference	0.75296	0.187
39DAP/reference	1.23438	0.301
41DAP/reference	0.83919	0.201
42DAP/reference	1.24036	0.098
43DAP/reference	0.99719	0.745
47DAP/reference	1.10827	0.593
52DAP/reference	1.12327	0.73
57DAP/reference	1.31153	0.038

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.61223	0.27
27DAP/17DAP	1.14298	0.506
39DAP/27DAP	3.72463
41DAP/39DAP	1.40139
42DAP/41DAP	0.78406	0.273
43DAP/42DAP	0.99502
47DAP/43DAP	0.88573	0.886
52DAP/47DAP	1.11853	0.987
57DAP/52DAP	1.47387	0.154
57DAP/7DAP	0.27413

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.92072	0.296
17DAP/reference	1.02753	0.971
27DAP/reference	1.1915	0.131
39DAP/reference	1.1765	0.297
41DAP/reference	1.06597	0.723
42DAP/reference	1.11425	0.534
43DAP/reference	0.91105	0.21
47DAP/reference	1.02013	1
52DAP/reference	1.02013	0.732
57DAP/reference	1.09038	0.382

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.22919	0.863
17DAP/reference	0.96624	0.594
27DAP/reference	0.96781	0.619
39DAP/reference	1.15069	0.255
41DAP/reference	0.86459	0.199
42DAP/reference	0.99537	0.655
43DAP/reference	1.05387	0.89
47DAP/reference	0.93508	0.359
52DAP/reference	1.2174	0.343
57DAP/reference	1.13904	0.874

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89895	0.169
17DAP/reference	1.27029	0.105
27DAP/reference	1.00724	0.843
39DAP/reference	1.08461	0.275
41DAP/reference	0.97789	0.618
42DAP/reference	0.99774	1
43DAP/reference	1.4076	0.142
47DAP/reference	1.5136	0.077
52DAP/reference	1.22884	0.448
57DAP/reference	1.09118	0.625

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.52568	0.966
26DAP/20DAP	N/A	N/A
34DAP/26DAP	1.21172	1
51DAP/34DAP	0.90587	0.727
52DAP/51DAP	0.70838	1
53DAP/52DAP	2.25227	0.58
55DAP/53DAP	0.7822	0.746
57DAP/55DAP	1.60213	0.793
62DAP/57DAP	1.10297	0.902
68DAP/62DAP	1.50646	0.869
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.82475	0.105

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.46933	1
IL7-5/WTpooled	0.58445
IL7-3/WTpooled	0.79084	0.293
IL12-4/WTpooled	0.98438	1
IL1-4/WTpooled	1.09852
WT/WTpooled	0.91799	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	2.49655
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	1.85498	0.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.00145	1
Manapal/WT (red)	N/A	N/A