Expression of 1-1-7.4.13.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83031 | 0.324 |
27DAP/17DAP | 1.22251 | 0.799 |
39DAP/27DAP | 0.72629 | 0.402 |
41DAP/39DAP | 1.07604 | 0.685 |
42DAP/41DAP | 1.24222 | 0.772 |
43DAP/42DAP | 0.87668 | 0.77 |
47DAP/43DAP | 1.22013 | 0.459 |
52DAP/47DAP | 1.14568 | 0.721 |
57DAP/52DAP | 1.12008 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00658 | 1 |
17DAP/reference | 1.0499 | 0.258 |
27DAP/reference | 1.0114 | 0.806 |
39DAP/reference | 0.98902 | 0.828 |
41DAP/reference | 1.0086 | 0.91 |
42DAP/reference | 0.93575 | 0.025 |
43DAP/reference | 0.91678 | 0.17 |
47DAP/reference | 0.95161 | 0.116 |
52DAP/reference | 0.97864 | 0.504 |
57DAP/reference | 0.86872 | 0.025 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02417 | 0.91 |
27DAP/17DAP | 1.03218 | 0.9 |
39DAP/27DAP | 0.98856 | 0.932 |
41DAP/39DAP | 1.09366 | 0.682 |
42DAP/41DAP | 1.03018 | 0.773 |
43DAP/42DAP | 0.91157 | 0.06 |
47DAP/43DAP | 0.94701 | 0.499 |
52DAP/47DAP | 0.9915 | 0.935 |
57DAP/52DAP | 1.00864 | 1 |
57DAP/7DAP | 1.03914 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.33569 | 0.263 |
17DAP/reference | 2.84758 | 0.006 |
27DAP/reference | 2.11615 | 0.007 |
39DAP/reference | 2.83129 | 0.005 |
41DAP/reference | 3.01963 | 0.011 |
42DAP/reference | 3.18742 | 0.006 |
43DAP/reference | 4.07986 | 0.007 |
47DAP/reference | 2.05105 | 0.106 |
52DAP/reference | 2.69224 | 0.007 |
57DAP/reference | 2.19799 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03749 | 0.612 |
17DAP/reference | 1.03124 | 0.367 |
27DAP/reference | 0.96855 | 0.452 |
39DAP/reference | 0.99505 | 0.661 |
41DAP/reference | 0.97689 | 0.481 |
42DAP/reference | 0.96658 | 0.321 |
43DAP/reference | 0.95142 | 0.438 |
47DAP/reference | 0.92799 | 0.016 |
52DAP/reference | 1.00948 | 1 |
57DAP/reference | 1.08052 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.66245 | 0.019 |
17DAP/reference | 1.50898 | 0.326 |
27DAP/reference | 3.04356 | 0.02 |
39DAP/reference | 2.73506 | 0.007 |
41DAP/reference | 2.15875 | 0.016 |
42DAP/reference | 2.37254 | 0.01 |
43DAP/reference | 1.80281 | 0.139 |
47DAP/reference | 1.04973 | 0.461 |
52DAP/reference | 3.38346 | 0.038 |
57DAP/reference | 1.84334 | 0.511 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99168 | 1 |
26DAP/20DAP | 0.98472 | 1 |
34DAP/26DAP | 1.00537 | 1 |
51DAP/34DAP | 0.89703 | 0.328 |
52DAP/51DAP | 0.99885 | 1 |
53DAP/52DAP | 1.01087 | 0.91 |
55DAP/53DAP | 0.99973 | 0.917 |
57DAP/55DAP | 1.15502 | 0.666 |
62DAP/57DAP | 1.15709 | 0.393 |
68DAP/62DAP | 0.96425 | 0.81 |
68DAP/14DAP | 1.18995 | 0.153 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91414 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.54032 | 0.068 |
Mature Green Tomato/Ripe Tomato | 2.76658 | 0.028 |
Immature Eggplant/Mature Eggplant | 0.77395 | 0.071 |
Ripe Pepper/Ripe Tomato | 2.99742 | 1 |
Mature Eggplant/Ripe Tomato | 2.00982 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0661 | 1 |
1-1-2/M82 | 0.93393 | 1 |
12-2/M82 | 1.08272 | 1 |
12-4/M82 | 0.81516 | 1 |
1-3/M82 | 0.85085 | 0.441 |
2-1-1/M82 | 1.03098 | 0.764 |
2-1/M82 | 1.32502 | 0.312 |
2-6/M82 | 0.97813 | 1 |
3-2/M82 | 1.02803 | 0.967 |
4-1-1/M82 | 0.90831 | 1 |
4-1/M82 | 1.15281 | 0.853 |
4-3-2/M82 | 0.91993 | 1 |
4-3/M82 | 1.07347 | 1 |
5-3/M82 | 1.00342 | 1 |
6-2/M82 | 1.00459 | 1 |
6-3/M82 | 1.01793 | 1 |
7-1/M82 | 0.90929 | |
7-2/M82 | 1.01203 | 1 |
9-3-2/M82 | 0.70635 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86939 | 1 |
IL2-6/WTpooled | 1.31077 | 0.584 |
IL7-5/WTpooled | 0.74562 | 1 |
IL7-3/WTpooled | 1.25194 | 1 |
IL12-4/WTpooled | 1.04902 | 0.532 |
IL1-4/WTpooled | 0.80822 | 0.834 |
WT/WTpooled | 1.07652 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.79506 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09326 | 0.774 |
DC3000/delta hrp 6h | 1.26222 | 0.857 |
DC3000/delta hrp 12h | 1.04359 | 1 |
DC3000/delta hrp 24h | 1.06308 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16945 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.08119 | 0.443 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.20686 | 1 |
Exp 36h | 0.74114 | 0.749 |
Exp 60h | 1.10129 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02512 | 1 |
Var 0h | 1.10518 | 0.936 |
Var 12h I row2-row1 | 1.08042 | 0.613 |
Var 12h NI row2-row1 | 1.09866 | 1 |
Var 36h I row2-row1 | 0.97824 | 1 |
Var 36h NI row2-row1 | 0.8867 | 0.549 |
Var 60h I row2-row1 | 0.96017 | 0.285 |
Var 60h NI row2-row1 | 1.22969 | 0.904 |
Time course 0hI-0hNI | 1.15415 | 0.662 |
Time course 12hI-12hNI | 1.03286 | 0.82 |
Time course 36hI-36hNI | 1.01015 | 0.975 |
Time course 60hI-60hNI | 1.40838 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1988 | 0.431 |
transgenic ySAMdc/azygous control (breaker) | 1.12188 | 1 |
transgenic ySAMdc/azygous control (red) | 0.81056 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02666 | 0.334 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82735 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.22332 | 1 |
Manapal/WT (break) | 0.8308 | 0.299 |
Manapal/WT (red) | 0.61552 | 0.181 |
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