Expression of 1-1-7.4.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.344990.348
27DAP/17DAP1.205340.841
39DAP/27DAP1.613230.101
41DAP/39DAP0.878240.518
42DAP/41DAP1.376730.397
43DAP/42DAP1.006850.937
47DAP/43DAP0.938070.76
52DAP/47DAP0.503150.056
57DAP/52DAP1.37520.694

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.806040.029
17DAP/reference1.083460.148
27DAP/reference1.118680.03
39DAP/reference1.020940.889
41DAP/reference0.930460.434
42DAP/reference0.996070.567
43DAP/reference1.075850.287
47DAP/reference1.017171
52DAP/reference0.849310.062
57DAP/reference1.006961

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.426910.041
27DAP/17DAP0.854750.418
39DAP/27DAP1.534110.05
41DAP/39DAP0.647540.055
42DAP/41DAP1.47640.004
43DAP/42DAP1.928120.013
47DAP/43DAP0.877270.265
52DAP/47DAP1.09930.73
57DAP/52DAP1.007780.887
57DAP/7DAP1.37471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.304590.078
17DAP/reference1.262860.01
27DAP/reference1.304760.023
39DAP/reference1.667060.009
41DAP/reference1.122750.26
42DAP/reference1.488160.018
43DAP/reference1.339130.013
47DAP/reference1.559640.036
52DAP/reference1.079890.428
57DAP/reference1.302770.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.841530.096
17DAP/reference1.014330.92
27DAP/reference0.883930.119
39DAP/reference0.866320.049
41DAP/reference0.932350.237
42DAP/reference1.014171
43DAP/reference0.809020.021
47DAP/reference0.943370.087
52DAP/reference0.8840.017
57DAP/reference0.851040.018

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.138020.18
17DAP/reference0.958570.519
27DAP/reference1.180880.143
39DAP/reference1.168410.081
41DAP/reference1.066670.818
42DAP/reference1.199190.08
43DAP/reference1.243810.131
47DAP/reference0.963660.325
52DAP/reference1.310480.324
57DAP/reference0.913640.212

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.994811
26DAP/20DAP0.934051
34DAP/26DAP0.933530.893
51DAP/34DAP1.255510.473
52DAP/51DAP0.730941
53DAP/52DAP1.382510.356
55DAP/53DAP0.775750.042
57DAP/55DAP1.267060.682
62DAP/57DAP0.933020.871
68DAP/62DAP0.883560.7
68DAP/14DAP1.264820.469

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.813920.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.467970.107
Mature Green Tomato/Ripe Tomato1.101280.399
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.523320.224
Mature Eggplant/Ripe Tomato0.5681

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.07911
1-1-2/M821.166841
12-2/M821.136811
12-4/M821.865391
1-3/M821.483520.248
2-1-1/M821.031741
2-1/M820.688630.322
2-6/M821.315420.364
3-2/M821.246530.549
4-1-1/M821.276511
4-1/M821.593560.853
4-3-2/M821.814630.241
4-3/M821.295991
5-3/M820.844380.447
6-2/M821.457480.253
6-3/M820.993911
7-1/M820.883870.466
7-2/M821.318250.385
9-3-2/M821.894470.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.159730.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.913821
IL12-4/WTpooled1.125160.785
IL1-4/WTpooled0.89825
WT/WTpooled1.010961

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.113751

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993181
DC3000/delta hrp 6h1.004310.95
DC3000/delta hrp 12h0.913441
DC3000/delta hrp 24h1.2710.047

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.27338
DC3000 delta B/DC3000 delta AB8.6738

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.938411
Exp 36h0.651480.406
Exp 60h0.716450.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.017491
Var 0h0.8050.782
Var 12h I row2-row11.664710.324
Var 12h NI row2-row10.821650.235
Var 36h I row2-row11.328090.291
Var 36h NI row2-row11.018561
Var 60h I row2-row11.005480.523
Var 60h NI row2-row10.893710.932
Time course 0hI-0hNI1.300040.323
Time course 12hI-12hNI0.805920.079
Time course 36hI-36hNI1.259380.355
Time course 60hI-60hNI1.411560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.95860.722
transgenic ySAMdc/azygous control (breaker)0.961781
transgenic ySAMdc/azygous control (red)0.913231

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.96370.065

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.971760.223

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.786081
Manapal/WT (break)0.631180.333
Manapal/WT (red)0.819290.274