Expression of 1-1-7.4.13.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34499 | 0.348 |
27DAP/17DAP | 1.20534 | 0.841 |
39DAP/27DAP | 1.61323 | 0.101 |
41DAP/39DAP | 0.87824 | 0.518 |
42DAP/41DAP | 1.37673 | 0.397 |
43DAP/42DAP | 1.00685 | 0.937 |
47DAP/43DAP | 0.93807 | 0.76 |
52DAP/47DAP | 0.50315 | 0.056 |
57DAP/52DAP | 1.3752 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80604 | 0.029 |
17DAP/reference | 1.08346 | 0.148 |
27DAP/reference | 1.11868 | 0.03 |
39DAP/reference | 1.02094 | 0.889 |
41DAP/reference | 0.93046 | 0.434 |
42DAP/reference | 0.99607 | 0.567 |
43DAP/reference | 1.07585 | 0.287 |
47DAP/reference | 1.01717 | 1 |
52DAP/reference | 0.84931 | 0.062 |
57DAP/reference | 1.00696 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42691 | 0.041 |
27DAP/17DAP | 0.85475 | 0.418 |
39DAP/27DAP | 1.53411 | 0.05 |
41DAP/39DAP | 0.64754 | 0.055 |
42DAP/41DAP | 1.4764 | 0.004 |
43DAP/42DAP | 1.92812 | 0.013 |
47DAP/43DAP | 0.87727 | 0.265 |
52DAP/47DAP | 1.0993 | 0.73 |
57DAP/52DAP | 1.00778 | 0.887 |
57DAP/7DAP | 1.3747 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30459 | 0.078 |
17DAP/reference | 1.26286 | 0.01 |
27DAP/reference | 1.30476 | 0.023 |
39DAP/reference | 1.66706 | 0.009 |
41DAP/reference | 1.12275 | 0.26 |
42DAP/reference | 1.48816 | 0.018 |
43DAP/reference | 1.33913 | 0.013 |
47DAP/reference | 1.55964 | 0.036 |
52DAP/reference | 1.07989 | 0.428 |
57DAP/reference | 1.30277 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84153 | 0.096 |
17DAP/reference | 1.01433 | 0.92 |
27DAP/reference | 0.88393 | 0.119 |
39DAP/reference | 0.86632 | 0.049 |
41DAP/reference | 0.93235 | 0.237 |
42DAP/reference | 1.01417 | 1 |
43DAP/reference | 0.80902 | 0.021 |
47DAP/reference | 0.94337 | 0.087 |
52DAP/reference | 0.884 | 0.017 |
57DAP/reference | 0.85104 | 0.018 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13802 | 0.18 |
17DAP/reference | 0.95857 | 0.519 |
27DAP/reference | 1.18088 | 0.143 |
39DAP/reference | 1.16841 | 0.081 |
41DAP/reference | 1.06667 | 0.818 |
42DAP/reference | 1.19919 | 0.08 |
43DAP/reference | 1.24381 | 0.131 |
47DAP/reference | 0.96366 | 0.325 |
52DAP/reference | 1.31048 | 0.324 |
57DAP/reference | 0.91364 | 0.212 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99481 | 1 |
26DAP/20DAP | 0.93405 | 1 |
34DAP/26DAP | 0.93353 | 0.893 |
51DAP/34DAP | 1.25551 | 0.473 |
52DAP/51DAP | 0.73094 | 1 |
53DAP/52DAP | 1.38251 | 0.356 |
55DAP/53DAP | 0.77575 | 0.042 |
57DAP/55DAP | 1.26706 | 0.682 |
62DAP/57DAP | 0.93302 | 0.871 |
68DAP/62DAP | 0.88356 | 0.7 |
68DAP/14DAP | 1.26482 | 0.469 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.81392 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.46797 | 0.107 |
Mature Green Tomato/Ripe Tomato | 1.10128 | 0.399 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.52332 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.568 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0791 | 1 |
1-1-2/M82 | 1.16684 | 1 |
12-2/M82 | 1.13681 | 1 |
12-4/M82 | 1.86539 | 1 |
1-3/M82 | 1.48352 | 0.248 |
2-1-1/M82 | 1.03174 | 1 |
2-1/M82 | 0.68863 | 0.322 |
2-6/M82 | 1.31542 | 0.364 |
3-2/M82 | 1.24653 | 0.549 |
4-1-1/M82 | 1.27651 | 1 |
4-1/M82 | 1.59356 | 0.853 |
4-3-2/M82 | 1.81463 | 0.241 |
4-3/M82 | 1.29599 | 1 |
5-3/M82 | 0.84438 | 0.447 |
6-2/M82 | 1.45748 | 0.253 |
6-3/M82 | 0.99391 | 1 |
7-1/M82 | 0.88387 | 0.466 |
7-2/M82 | 1.31825 | 0.385 |
9-3-2/M82 | 1.89447 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.15973 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.91382 | 1 |
IL12-4/WTpooled | 1.12516 | 0.785 |
IL1-4/WTpooled | 0.89825 | |
WT/WTpooled | 1.01096 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11375 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99318 | 1 |
DC3000/delta hrp 6h | 1.00431 | 0.95 |
DC3000/delta hrp 12h | 0.91344 | 1 |
DC3000/delta hrp 24h | 1.271 | 0.047 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.27338 | |
DC3000 delta B/DC3000 delta AB | 8.6738 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93841 | 1 |
Exp 36h | 0.65148 | 0.406 |
Exp 60h | 0.71645 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01749 | 1 |
Var 0h | 0.805 | 0.782 |
Var 12h I row2-row1 | 1.66471 | 0.324 |
Var 12h NI row2-row1 | 0.82165 | 0.235 |
Var 36h I row2-row1 | 1.32809 | 0.291 |
Var 36h NI row2-row1 | 1.01856 | 1 |
Var 60h I row2-row1 | 1.00548 | 0.523 |
Var 60h NI row2-row1 | 0.89371 | 0.932 |
Time course 0hI-0hNI | 1.30004 | 0.323 |
Time course 12hI-12hNI | 0.80592 | 0.079 |
Time course 36hI-36hNI | 1.25938 | 0.355 |
Time course 60hI-60hNI | 1.41156 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9586 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.96178 | 1 |
transgenic ySAMdc/azygous control (red) | 0.91323 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9637 | 0.065 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.97176 | 0.223 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.78608 | 1 |
Manapal/WT (break) | 0.63118 | 0.333 |
Manapal/WT (red) | 0.81929 | 0.274 |
|
|