Expression of 1-1-7.4.16.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.711840.153
27DAP/17DAP1.190340.849
39DAP/27DAP1.30080.56
41DAP/39DAP1.206560.203
42DAP/41DAP1.021471
43DAP/42DAP0.985990.931
47DAP/43DAP0.877630.58
52DAP/47DAP1.387060.327
57DAP/52DAP1.142540.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.174710.278
17DAP/reference0.854780.12
27DAP/reference0.859540.137
39DAP/reference0.882020.324
41DAP/reference0.802690.039
42DAP/reference1.206460.027
43DAP/reference1.205780.018
47DAP/reference1.137870.223
52DAP/reference0.953010.416
57DAP/reference1.263270.044

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.866020.245
27DAP/17DAP1.107450.546
39DAP/27DAP1.11840.32
41DAP/39DAP0.968090.934
42DAP/41DAP1.057810.81
43DAP/42DAP1.088950.25
47DAP/43DAP1.059110.765
52DAP/47DAP0.981480.913
57DAP/52DAP1.005711
57DAP/7DAP0.906651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.370860.042
17DAP/reference1.052281
27DAP/reference0.874760.135
39DAP/reference0.854040.198
41DAP/reference0.848290.103
42DAP/reference0.712920.025
43DAP/reference1.012381
47DAP/reference1.131420.458
52DAP/reference1.013231
57DAP/reference0.88910.215

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.072380.794
17DAP/reference0.663890.005
27DAP/reference0.771540.039
39DAP/reference0.91410.227
41DAP/reference0.844280.06
42DAP/reference1.300310.915
43DAP/reference0.598620.006
47DAP/reference0.868460.097
52DAP/reference0.704260.004
57DAP/reference0.673370.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.312370.106
17DAP/reference0.787540.097
27DAP/reference0.880070.069
39DAP/reference0.946090.271
41DAP/reference0.904280.331
42DAP/reference0.977260.671
43DAP/reference1.167930.375
47DAP/reference1.003190.667
52DAP/reference1.154840.592
57DAP/reference0.955870.387

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.116150.966
26DAP/20DAP1.115420.924
34DAP/26DAP1.015321
51DAP/34DAP1.140680.775
52DAP/51DAP1.163030.579
53DAP/52DAP1.41910.057
55DAP/53DAP1.069070.764
57DAP/55DAP0.594460.024
62DAP/57DAP0.902420.466
68DAP/62DAP1.019450.885
68DAP/14DAP1.334180.087

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.08590.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.61630.14
Mature Green Tomato/Ripe Tomato0.630310.018
Immature Eggplant/Mature Eggplant2.872440.05
Ripe Pepper/Ripe Tomato1.191031
Mature Eggplant/Ripe Tomato1.276741

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.097790.877
1-1-2/M821.13731
12-2/M821.073691
12-4/M821.047911
1-3/M821.624070.248
2-1-1/M820.92783
2-1/M820.85460.74
2-6/M821.102750.505
3-2/M821.293090.549
4-1-1/M821.415521
4-1/M820.874561
4-3-2/M821.423680.262
4-3/M821.565281
5-3/M820.82240.447
6-2/M821.67921
6-3/M821.155481
7-1/M820.848840.509
7-2/M821.669860.324
9-3-2/M821.613760.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.076441
IL2-6/WTpooled1.141360.419
IL7-5/WTpooled0.807351
IL7-3/WTpooled1.011421
IL12-4/WTpooled0.844241
IL1-4/WTpooled1.013021
WT/WTpooled1.022751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.227750.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.01580.921
DC3000/delta hrp 6h0.995020.95
DC3000/delta hrp 12h1.052581
DC3000/delta hrp 24h1.264790.085

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.158730.073
DC3000 delta B/DC3000 delta AB1.189210.169

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.082131
Exp 36h1.680280.326
Exp 60h1.481120.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.992131
Var 0h0.484461
Var 12h I row2-row11.184580.348
Var 12h NI row2-row10.959310.713
Var 36h I row2-row10.95971
Var 36h NI row2-row10.930320.584
Var 60h I row2-row10.859510.582
Var 60h NI row2-row10.95640.932
Time course 0hI-0hNI1.050010.852
Time course 12hI-12hNI1.062610.308
Time course 36hI-36hNI1.224780.007
Time course 60hI-60hNI1.944370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.020890.347
transgenic ySAMdc/azygous control (breaker)0.878770.251
transgenic ySAMdc/azygous control (red)1.053930.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.100290.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.825840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.817650.172
Manapal/WT (break)0.853851
Manapal/WT (red)0.863510.424