Expression of 1-1-7.4.16.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.71184 | 0.153 |
27DAP/17DAP | 1.19034 | 0.849 |
39DAP/27DAP | 1.3008 | 0.56 |
41DAP/39DAP | 1.20656 | 0.203 |
42DAP/41DAP | 1.02147 | 1 |
43DAP/42DAP | 0.98599 | 0.931 |
47DAP/43DAP | 0.87763 | 0.58 |
52DAP/47DAP | 1.38706 | 0.327 |
57DAP/52DAP | 1.14254 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17471 | 0.278 |
17DAP/reference | 0.85478 | 0.12 |
27DAP/reference | 0.85954 | 0.137 |
39DAP/reference | 0.88202 | 0.324 |
41DAP/reference | 0.80269 | 0.039 |
42DAP/reference | 1.20646 | 0.027 |
43DAP/reference | 1.20578 | 0.018 |
47DAP/reference | 1.13787 | 0.223 |
52DAP/reference | 0.95301 | 0.416 |
57DAP/reference | 1.26327 | 0.044 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86602 | 0.245 |
27DAP/17DAP | 1.10745 | 0.546 |
39DAP/27DAP | 1.1184 | 0.32 |
41DAP/39DAP | 0.96809 | 0.934 |
42DAP/41DAP | 1.05781 | 0.81 |
43DAP/42DAP | 1.08895 | 0.25 |
47DAP/43DAP | 1.05911 | 0.765 |
52DAP/47DAP | 0.98148 | 0.913 |
57DAP/52DAP | 1.00571 | 1 |
57DAP/7DAP | 0.90665 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37086 | 0.042 |
17DAP/reference | 1.05228 | 1 |
27DAP/reference | 0.87476 | 0.135 |
39DAP/reference | 0.85404 | 0.198 |
41DAP/reference | 0.84829 | 0.103 |
42DAP/reference | 0.71292 | 0.025 |
43DAP/reference | 1.01238 | 1 |
47DAP/reference | 1.13142 | 0.458 |
52DAP/reference | 1.01323 | 1 |
57DAP/reference | 0.8891 | 0.215 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07238 | 0.794 |
17DAP/reference | 0.66389 | 0.005 |
27DAP/reference | 0.77154 | 0.039 |
39DAP/reference | 0.9141 | 0.227 |
41DAP/reference | 0.84428 | 0.06 |
42DAP/reference | 1.30031 | 0.915 |
43DAP/reference | 0.59862 | 0.006 |
47DAP/reference | 0.86846 | 0.097 |
52DAP/reference | 0.70426 | 0.004 |
57DAP/reference | 0.67337 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31237 | 0.106 |
17DAP/reference | 0.78754 | 0.097 |
27DAP/reference | 0.88007 | 0.069 |
39DAP/reference | 0.94609 | 0.271 |
41DAP/reference | 0.90428 | 0.331 |
42DAP/reference | 0.97726 | 0.671 |
43DAP/reference | 1.16793 | 0.375 |
47DAP/reference | 1.00319 | 0.667 |
52DAP/reference | 1.15484 | 0.592 |
57DAP/reference | 0.95587 | 0.387 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11615 | 0.966 |
26DAP/20DAP | 1.11542 | 0.924 |
34DAP/26DAP | 1.01532 | 1 |
51DAP/34DAP | 1.14068 | 0.775 |
52DAP/51DAP | 1.16303 | 0.579 |
53DAP/52DAP | 1.4191 | 0.057 |
55DAP/53DAP | 1.06907 | 0.764 |
57DAP/55DAP | 0.59446 | 0.024 |
62DAP/57DAP | 0.90242 | 0.466 |
68DAP/62DAP | 1.01945 | 0.885 |
68DAP/14DAP | 1.33418 | 0.087 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0859 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.6163 | 0.14 |
Mature Green Tomato/Ripe Tomato | 0.63031 | 0.018 |
Immature Eggplant/Mature Eggplant | 2.87244 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.19103 | 1 |
Mature Eggplant/Ripe Tomato | 1.27674 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09779 | 0.877 |
1-1-2/M82 | 1.1373 | 1 |
12-2/M82 | 1.07369 | 1 |
12-4/M82 | 1.04791 | 1 |
1-3/M82 | 1.62407 | 0.248 |
2-1-1/M82 | 0.92783 | |
2-1/M82 | 0.8546 | 0.74 |
2-6/M82 | 1.10275 | 0.505 |
3-2/M82 | 1.29309 | 0.549 |
4-1-1/M82 | 1.41552 | 1 |
4-1/M82 | 0.87456 | 1 |
4-3-2/M82 | 1.42368 | 0.262 |
4-3/M82 | 1.56528 | 1 |
5-3/M82 | 0.8224 | 0.447 |
6-2/M82 | 1.67921 | |
6-3/M82 | 1.15548 | 1 |
7-1/M82 | 0.84884 | 0.509 |
7-2/M82 | 1.66986 | 0.324 |
9-3-2/M82 | 1.61376 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07644 | 1 |
IL2-6/WTpooled | 1.14136 | 0.419 |
IL7-5/WTpooled | 0.80735 | 1 |
IL7-3/WTpooled | 1.01142 | 1 |
IL12-4/WTpooled | 0.84424 | 1 |
IL1-4/WTpooled | 1.01302 | 1 |
WT/WTpooled | 1.02275 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.22775 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0158 | 0.921 |
DC3000/delta hrp 6h | 0.99502 | 0.95 |
DC3000/delta hrp 12h | 1.05258 | 1 |
DC3000/delta hrp 24h | 1.26479 | 0.085 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15873 | 0.073 |
DC3000 delta B/DC3000 delta AB | 1.18921 | 0.169 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08213 | 1 |
Exp 36h | 1.68028 | 0.326 |
Exp 60h | 1.48112 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99213 | 1 |
Var 0h | 0.48446 | 1 |
Var 12h I row2-row1 | 1.18458 | 0.348 |
Var 12h NI row2-row1 | 0.95931 | 0.713 |
Var 36h I row2-row1 | 0.9597 | 1 |
Var 36h NI row2-row1 | 0.93032 | 0.584 |
Var 60h I row2-row1 | 0.85951 | 0.582 |
Var 60h NI row2-row1 | 0.9564 | 0.932 |
Time course 0hI-0hNI | 1.05001 | 0.852 |
Time course 12hI-12hNI | 1.06261 | 0.308 |
Time course 36hI-36hNI | 1.22478 | 0.007 |
Time course 60hI-60hNI | 1.94437 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02089 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 0.87877 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.05393 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10029 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.82584 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81765 | 0.172 |
Manapal/WT (break) | 0.85385 | 1 |
Manapal/WT (red) | 0.86351 | 0.424 |
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