Expression of 1-1-7.4.16.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.115110.63
27DAP/17DAP1.100770.854
39DAP/27DAP1.221270.53
41DAP/39DAP0.901820.591
42DAP/41DAP0.903881
43DAP/42DAP1.053091
47DAP/43DAP0.898510.66
52DAP/47DAP1.008210.889
57DAP/52DAP1.14050.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.973540.513
17DAP/reference1.02770.631
27DAP/reference1.056240.306
39DAP/reference1.08290.035
41DAP/reference1.051370.624
42DAP/reference0.846790.004
43DAP/reference0.922010.41
47DAP/reference0.911650.042
52DAP/reference0.890420.23
57DAP/reference0.904620.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.836970.107
27DAP/17DAP1.037980.942
39DAP/27DAP0.959850.747
41DAP/39DAP1.098210.79
42DAP/41DAP1.179780.991
43DAP/42DAP1.105350.788
47DAP/43DAP1.05941
52DAP/47DAP1.45360.315
57DAP/52DAP1.823980.244
57DAP/7DAP1.082551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.133590.201
17DAP/reference1.18250.03
27DAP/reference1.037610.804
39DAP/reference1.171470.096
41DAP/reference1.365920.023
42DAP/reference1.379930.008
43DAP/reference1.245160.015
47DAP/reference1.071760.632
52DAP/reference1.298950.058
57DAP/reference1.325470.022

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.964990.548
17DAP/reference0.917930.066
27DAP/reference0.857930.093
39DAP/reference0.910480.126
41DAP/reference0.969150.403
42DAP/reference0.884250.081
43DAP/reference0.931190.224
47DAP/reference0.932890.137
52DAP/reference0.880880.01
57DAP/reference0.909740.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096920.329
17DAP/reference1.03240.865
27DAP/reference1.234220.035
39DAP/reference1.172640.14
41DAP/reference1.225130.15
42DAP/reference1.061910.802
43DAP/reference0.922170.365
47DAP/reference1.003181
52DAP/reference1.276630.228
57DAP/reference0.854930.177

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.965731
26DAP/20DAP1.445460.404
34DAP/26DAP0.812180.186
51DAP/34DAP1.049740.829
52DAP/51DAP0.98031
53DAP/52DAP1.25590.444
55DAP/53DAP0.837810.303
57DAP/55DAP3.250560.793
62DAP/57DAP1.013190.994
68DAP/62DAP1.186530.707
68DAP/14DAP0.818170.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.650320.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.754250.212
Mature Green Tomato/Ripe Tomato1.05530.814
Immature Eggplant/Mature Eggplant0.966790.808
Ripe Pepper/Ripe Tomato1.013571
Mature Eggplant/Ripe Tomato1.102051

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.061370.877
1-1-2/M820.893081
12-2/M821.07631
12-4/M821.122931
1-3/M820.91853
2-1-1/M820.2032
2-1/M82N/AN/A
2-6/M821.019171
3-2/M821.069740.717
4-1-1/M820.96438
4-1/M820.945581
4-3-2/M821.054711
4-3/M821.01664
5-3/M821.040431
6-2/M821.17184
6-3/M821.229261
7-1/M820.996331
7-2/M820.94812
9-3-2/M821.088081

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.889460.321
IL2-6/WTpooled1.071190.419
IL7-5/WTpooled0.711071
IL7-3/WTpooled1.276810.362
IL12-4/WTpooled1.012911
IL1-4/WTpooled0.925430.834
WT/WTpooled0.999471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.210320.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052940.921
DC3000/delta hrp 6h1.061641
DC3000/delta hrp 12h0.910621
DC3000/delta hrp 24h1.109260.283

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.54611
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040141
Exp 36h1.1210.693
Exp 60h0.993191

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.089391
Var 0h2.811110.98
Var 12h I row2-row11.111750.544
Var 12h NI row2-row11.237820.34
Var 36h I row2-row11.207650.908
Var 36h NI row2-row10.862690.743
Var 60h I row2-row10.80042
Var 60h NI row2-row10.910650.932
Time course 0hI-0hNI0.888130.253
Time course 12hI-12hNI0.999621
Time course 36hI-36hNI0.963360.403
Time course 60hI-60hNI1.024881

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.961460.567
transgenic ySAMdc/azygous control (breaker)0.922010.49
transgenic ySAMdc/azygous control (red)0.979251

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.06470.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.874020.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.100260.14
Manapal/WT (break)1.233150.183
Manapal/WT (red)0.752310.181