Expression of 1-1-7.4.17.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79843 | 0.339 |
27DAP/17DAP | 1.74623 | 0.708 |
39DAP/27DAP | 1.34826 | 0.558 |
41DAP/39DAP | 1.35126 | 0.255 |
42DAP/41DAP | 4.26722 | 0.016 |
43DAP/42DAP | 2.44819 | 0.867 |
47DAP/43DAP | 1.22441 | 0.42 |
52DAP/47DAP | 0.48232 | 0.033 |
57DAP/52DAP | 1.09055 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7108 | 0.177 |
17DAP/reference | 0.9966 | 0.957 |
27DAP/reference | 1.29876 | 0.569 |
39DAP/reference | 0.97067 | 0.762 |
41DAP/reference | 1.43387 | 0.047 |
42DAP/reference | 1.0745 | 0.995 |
43DAP/reference | 1.02498 | 1 |
47DAP/reference | 1.15439 | 0.478 |
52DAP/reference | 1.20202 | 0.096 |
57DAP/reference | 1.11012 | 0.621 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1493 | 0.881 |
27DAP/17DAP | 1.55558 | 0.55 |
39DAP/27DAP | 1.88517 | 0.046 |
41DAP/39DAP | 0.59559 | 0.016 |
42DAP/41DAP | 1.55231 | 0.01 |
43DAP/42DAP | 2.85007 | 0.014 |
47DAP/43DAP | 1.09979 | 0.54 |
52DAP/47DAP | 1.41518 | 0.194 |
57DAP/52DAP | 1.21386 | 0.444 |
57DAP/7DAP | 2.44876 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98267 | 0.613 |
17DAP/reference | 1.00501 | 0.599 |
27DAP/reference | 1.00381 | 0.698 |
39DAP/reference | 0.80688 | 0.126 |
41DAP/reference | 0.74265 | 0.054 |
42DAP/reference | 0.86976 | 0.073 |
43DAP/reference | 0.94495 | 0.351 |
47DAP/reference | 0.97003 | 0.671 |
52DAP/reference | 1.23937 | 0.121 |
57DAP/reference | 1.03978 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88887 | 0.58 |
17DAP/reference | 0.90625 | 0.367 |
27DAP/reference | 1.1126 | 0.66 |
39DAP/reference | 1.22149 | 0.239 |
41DAP/reference | 1.24936 | 0.053 |
42DAP/reference | 1.16004 | 0.166 |
43DAP/reference | 1.21826 | 0.688 |
47DAP/reference | 1.115 | 0.572 |
52DAP/reference | 1.05867 | 1 |
57DAP/reference | 1.03816 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99612 | 0.607 |
17DAP/reference | 1.07443 | 0.503 |
27DAP/reference | 0.82763 | 0.073 |
39DAP/reference | 0.9566 | 0.464 |
41DAP/reference | 0.98494 | 0.682 |
42DAP/reference | 1.15765 | 0.416 |
43DAP/reference | 1.05186 | 0.614 |
47DAP/reference | 1.10907 | 0.901 |
52DAP/reference | 1.39884 | 0.134 |
57DAP/reference | 1.30589 | 0.118 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.43219 | 0.966 |
26DAP/20DAP | 1.21655 | 1 |
34DAP/26DAP | 1.18373 | 1 |
51DAP/34DAP | 1.03506 | 0.898 |
52DAP/51DAP | 1.22899 | 0.446 |
53DAP/52DAP | 1.02412 | 1 |
55DAP/53DAP | 0.93044 | 0.709 |
57DAP/55DAP | 1.09874 | 0.915 |
62DAP/57DAP | 0.91698 | 0.871 |
68DAP/62DAP | 1.31943 | 0.491 |
68DAP/14DAP | 0.73343 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 12.4627 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.37255 | |
Mature Green Tomato/Ripe Tomato | 0.06481 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.84849 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 3.16226 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.07219 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.97847 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.72218 | 0.512 |
4-3-2/M82 | 2.56431 | 0.241 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.82226 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 2.50667 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81256 | 0.247 |
IL2-6/WTpooled | 1.12522 | 0.659 |
IL7-5/WTpooled | 0.07904 | |
IL7-3/WTpooled | 0.84328 | 0.418 |
IL12-4/WTpooled | 1.93969 | 0.646 |
IL1-4/WTpooled | 0.69306 | 0.389 |
WT/WTpooled | 1.03459 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.89083 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.63229 | 0.656 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.45051 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97991 | 1 |
Var 0h | 1.61335 | 0.98 |
Var 12h I row2-row1 | 1.01198 | 0.795 |
Var 12h NI row2-row1 | 1.22814 | 0.649 |
Var 36h I row2-row1 | 1.16453 | 0.742 |
Var 36h NI row2-row1 | 0.83425 | 0.743 |
Var 60h I row2-row1 | 0.83733 | 0.292 |
Var 60h NI row2-row1 | 0.82903 | 0.359 |
Time course 0hI-0hNI | 0.99616 | 0.943 |
Time course 12hI-12hNI | 1.10443 | 0.293 |
Time course 36hI-36hNI | 1.93651 | 0.005 |
Time course 60hI-60hNI | 2.85276 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.14665 | 1 |
Manapal/WT (red) | 0.79341 | 0.229 |
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