Expression of 1-1-7.4.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.798430.339
27DAP/17DAP1.746230.708
39DAP/27DAP1.348260.558
41DAP/39DAP1.351260.255
42DAP/41DAP4.267220.016
43DAP/42DAP2.448190.867
47DAP/43DAP1.224410.42
52DAP/47DAP0.482320.033
57DAP/52DAP1.090550.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.71080.177
17DAP/reference0.99660.957
27DAP/reference1.298760.569
39DAP/reference0.970670.762
41DAP/reference1.433870.047
42DAP/reference1.07450.995
43DAP/reference1.024981
47DAP/reference1.154390.478
52DAP/reference1.202020.096
57DAP/reference1.110120.621

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.14930.881
27DAP/17DAP1.555580.55
39DAP/27DAP1.885170.046
41DAP/39DAP0.595590.016
42DAP/41DAP1.552310.01
43DAP/42DAP2.850070.014
47DAP/43DAP1.099790.54
52DAP/47DAP1.415180.194
57DAP/52DAP1.213860.444
57DAP/7DAP2.448760.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.982670.613
17DAP/reference1.005010.599
27DAP/reference1.003810.698
39DAP/reference0.806880.126
41DAP/reference0.742650.054
42DAP/reference0.869760.073
43DAP/reference0.944950.351
47DAP/reference0.970030.671
52DAP/reference1.239370.121
57DAP/reference1.039781

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.888870.58
17DAP/reference0.906250.367
27DAP/reference1.11260.66
39DAP/reference1.221490.239
41DAP/reference1.249360.053
42DAP/reference1.160040.166
43DAP/reference1.218260.688
47DAP/reference1.1150.572
52DAP/reference1.058671
57DAP/reference1.038160.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996120.607
17DAP/reference1.074430.503
27DAP/reference0.827630.073
39DAP/reference0.95660.464
41DAP/reference0.984940.682
42DAP/reference1.157650.416
43DAP/reference1.051860.614
47DAP/reference1.109070.901
52DAP/reference1.398840.134
57DAP/reference1.305890.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.432190.966
26DAP/20DAP1.216551
34DAP/26DAP1.183731
51DAP/34DAP1.035060.898
52DAP/51DAP1.228990.446
53DAP/52DAP1.024121
55DAP/53DAP0.930440.709
57DAP/55DAP1.098740.915
62DAP/57DAP0.916980.871
68DAP/62DAP1.319430.491
68DAP/14DAP0.73343

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker12.46270.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.37255
Mature Green Tomato/Ripe Tomato0.064810.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.84849
12-2/M82N/AN/A
12-4/M823.16226
1-3/M82N/AN/A
2-1-1/M821.07219
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.97847
4-1-1/M82N/AN/A
4-1/M821.722180.512
4-3-2/M822.564310.241
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.82226
7-2/M82N/AN/A
9-3-2/M822.506670.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.812560.247
IL2-6/WTpooled1.125220.659
IL7-5/WTpooled0.07904
IL7-3/WTpooled0.843280.418
IL12-4/WTpooled1.939690.646
IL1-4/WTpooled0.693060.389
WT/WTpooled1.034591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.890830.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.632290.656
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.45051
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979911
Var 0h1.613350.98
Var 12h I row2-row11.011980.795
Var 12h NI row2-row11.228140.649
Var 36h I row2-row11.164530.742
Var 36h NI row2-row10.834250.743
Var 60h I row2-row10.837330.292
Var 60h NI row2-row10.829030.359
Time course 0hI-0hNI0.996160.943
Time course 12hI-12hNI1.104430.293
Time course 36hI-36hNI1.936510.005
Time course 60hI-60hNI2.852760.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.146651
Manapal/WT (red)0.793410.229