Expression of 1-1-7.4.17.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.391720.211
27DAP/17DAP0.93480.796
39DAP/27DAP1.369410.558
41DAP/39DAP1.566790.073
42DAP/41DAP1.36030.488
43DAP/42DAP1.852160.164
47DAP/43DAP2.275560.208
52DAP/47DAP1.678840.23
57DAP/52DAP1.072360.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.938180.422
17DAP/reference1.071710.565
27DAP/reference1.151330.771
39DAP/reference1.101360.545
41DAP/reference1.190150.287
42DAP/reference1.070970.782
43DAP/reference0.98730.805
47DAP/reference1.05231
52DAP/reference1.251990.088
57DAP/reference1.186920.028

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.280770.158
27DAP/17DAP1.300640.5
39DAP/27DAP2.412530.043
41DAP/39DAP0.373670.013
42DAP/41DAP5.58050.001
43DAP/42DAP4.046320.014
47DAP/43DAP0.952740.787
52DAP/47DAP1.299290.512
57DAP/52DAP1.103180.877
57DAP/7DAP11.54280.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.264330.082
17DAP/reference1.134250.437
27DAP/reference0.949470.2
39DAP/reference0.979590.474
41DAP/reference1.03681
42DAP/reference0.912960.026
43DAP/reference1.079720.603
47DAP/reference0.960790.504
52DAP/reference1.092150.732
57DAP/reference0.816150.149

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.947540.72
17DAP/reference1.099380.613
27DAP/reference1.060030.765
39DAP/reference1.302950.182
41DAP/reference1.123450.657
42DAP/reference1.00870.723
43DAP/reference1.201770.149
47DAP/reference1.014821
52DAP/reference1.142910.629
57DAP/reference1.046781

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.019691
17DAP/reference1.07930.595
27DAP/reference1.111530.26
39DAP/reference0.872960.043
41DAP/reference0.986780.618
42DAP/reference1.13510.49
43DAP/reference1.225870.202
47DAP/reference1.552520.044
52DAP/reference0.844070.223
57DAP/reference1.468960.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAP0.677050.244
34DAP/26DAP1.260010.819
51DAP/34DAP4.793630.019
52DAP/51DAP0.681170.151
53DAP/52DAP9.195980.016
55DAP/53DAP0.985280.852
57DAP/55DAP0.623060.04
62DAP/57DAP0.29090.007
68DAP/62DAP1.529140.573
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.516760.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.158430.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.77904
12-2/M82N/AN/A
12-4/M821.374121
1-3/M82N/AN/A
2-1-1/M821.34941
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.104180.428
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.423
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.35071
7-2/M82N/AN/A
9-3-2/M820.98473

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.955790.247
IL2-6/WTpooled1.206770.419
IL7-5/WTpooled0.40624
IL7-3/WTpooled1.344490.362
IL12-4/WTpooled1.001311
IL1-4/WTpooled1.020011
WT/WTpooled1.172810.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.353591

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.875530.46
DC3000 delta B/DC3000 delta AB0.984250.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.059641
Var 0h1.089810.936
Var 12h I row2-row11.205390.406
Var 12h NI row2-row11.207620.649
Var 36h I row2-row11.235240.908
Var 36h NI row2-row11.112791
Var 60h I row2-row10.696120.292
Var 60h NI row2-row11.00961
Time course 0hI-0hNI1.043760.852
Time course 12hI-12hNI0.928030.33
Time course 36hI-36hNI1.062890.513
Time course 60hI-60hNI1.956850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.067810.13
Manapal/WT (red)1.081011