Expression of 1-1-7.4.17.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39172 | 0.211 |
27DAP/17DAP | 0.9348 | 0.796 |
39DAP/27DAP | 1.36941 | 0.558 |
41DAP/39DAP | 1.56679 | 0.073 |
42DAP/41DAP | 1.3603 | 0.488 |
43DAP/42DAP | 1.85216 | 0.164 |
47DAP/43DAP | 2.27556 | 0.208 |
52DAP/47DAP | 1.67884 | 0.23 |
57DAP/52DAP | 1.07236 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93818 | 0.422 |
17DAP/reference | 1.07171 | 0.565 |
27DAP/reference | 1.15133 | 0.771 |
39DAP/reference | 1.10136 | 0.545 |
41DAP/reference | 1.19015 | 0.287 |
42DAP/reference | 1.07097 | 0.782 |
43DAP/reference | 0.9873 | 0.805 |
47DAP/reference | 1.0523 | 1 |
52DAP/reference | 1.25199 | 0.088 |
57DAP/reference | 1.18692 | 0.028 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28077 | 0.158 |
27DAP/17DAP | 1.30064 | 0.5 |
39DAP/27DAP | 2.41253 | 0.043 |
41DAP/39DAP | 0.37367 | 0.013 |
42DAP/41DAP | 5.5805 | 0.001 |
43DAP/42DAP | 4.04632 | 0.014 |
47DAP/43DAP | 0.95274 | 0.787 |
52DAP/47DAP | 1.29929 | 0.512 |
57DAP/52DAP | 1.10318 | 0.877 |
57DAP/7DAP | 11.5428 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.26433 | 0.082 |
17DAP/reference | 1.13425 | 0.437 |
27DAP/reference | 0.94947 | 0.2 |
39DAP/reference | 0.97959 | 0.474 |
41DAP/reference | 1.0368 | 1 |
42DAP/reference | 0.91296 | 0.026 |
43DAP/reference | 1.07972 | 0.603 |
47DAP/reference | 0.96079 | 0.504 |
52DAP/reference | 1.09215 | 0.732 |
57DAP/reference | 0.81615 | 0.149 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94754 | 0.72 |
17DAP/reference | 1.09938 | 0.613 |
27DAP/reference | 1.06003 | 0.765 |
39DAP/reference | 1.30295 | 0.182 |
41DAP/reference | 1.12345 | 0.657 |
42DAP/reference | 1.0087 | 0.723 |
43DAP/reference | 1.20177 | 0.149 |
47DAP/reference | 1.01482 | 1 |
52DAP/reference | 1.14291 | 0.629 |
57DAP/reference | 1.04678 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01969 | 1 |
17DAP/reference | 1.0793 | 0.595 |
27DAP/reference | 1.11153 | 0.26 |
39DAP/reference | 0.87296 | 0.043 |
41DAP/reference | 0.98678 | 0.618 |
42DAP/reference | 1.1351 | 0.49 |
43DAP/reference | 1.22587 | 0.202 |
47DAP/reference | 1.55252 | 0.044 |
52DAP/reference | 0.84407 | 0.223 |
57DAP/reference | 1.46896 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | N/A | N/A |
26DAP/20DAP | 0.67705 | 0.244 |
34DAP/26DAP | 1.26001 | 0.819 |
51DAP/34DAP | 4.79363 | 0.019 |
52DAP/51DAP | 0.68117 | 0.151 |
53DAP/52DAP | 9.19598 | 0.016 |
55DAP/53DAP | 0.98528 | 0.852 |
57DAP/55DAP | 0.62306 | 0.04 |
62DAP/57DAP | 0.2909 | 0.007 |
68DAP/62DAP | 1.52914 | 0.573 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.51676 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.15843 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.77904 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.37412 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.34941 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.10418 | 0.428 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.423 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.35071 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.98473 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95579 | 0.247 |
IL2-6/WTpooled | 1.20677 | 0.419 |
IL7-5/WTpooled | 0.40624 | |
IL7-3/WTpooled | 1.34449 | 0.362 |
IL12-4/WTpooled | 1.00131 | 1 |
IL1-4/WTpooled | 1.02001 | 1 |
WT/WTpooled | 1.17281 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.35359 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87553 | 0.46 |
DC3000 delta B/DC3000 delta AB | 0.98425 | 0.936 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05964 | 1 |
Var 0h | 1.08981 | 0.936 |
Var 12h I row2-row1 | 1.20539 | 0.406 |
Var 12h NI row2-row1 | 1.20762 | 0.649 |
Var 36h I row2-row1 | 1.23524 | 0.908 |
Var 36h NI row2-row1 | 1.11279 | 1 |
Var 60h I row2-row1 | 0.69612 | 0.292 |
Var 60h NI row2-row1 | 1.0096 | 1 |
Time course 0hI-0hNI | 1.04376 | 0.852 |
Time course 12hI-12hNI | 0.92803 | 0.33 |
Time course 36hI-36hNI | 1.06289 | 0.513 |
Time course 60hI-60hNI | 1.95685 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.06781 | 0.13 |
Manapal/WT (red) | 1.08101 | 1 |
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