Expression of 1-1-7.4.17.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972980.76
27DAP/17DAP1.166350.852
39DAP/27DAP0.987390.782
41DAP/39DAP0.998040.935
42DAP/41DAP1.19260.802
43DAP/42DAP1.436830.854
47DAP/43DAP1.33560.334
52DAP/47DAP0.901630.695
57DAP/52DAP1.349320.764

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.112180.788
17DAP/reference1.295070.028
27DAP/reference1.215830.075
39DAP/reference1.073680.486
41DAP/reference1.180010.085
42DAP/reference1.166050.08
43DAP/reference1.083980.36
47DAP/reference0.997730.602
52DAP/reference1.393990.043
57DAP/reference1.097160.783

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.92150.311
27DAP/17DAP1.035180.909
39DAP/27DAP1.041170.615
41DAP/39DAP1.03890.763
42DAP/41DAP1.01241
43DAP/42DAP1.018850.699
47DAP/43DAP1.028750.892
52DAP/47DAP1.007170.979
57DAP/52DAP0.897210.245
57DAP/7DAP1.038521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.91040.224
17DAP/reference0.85220.144
27DAP/reference1.060640.8
39DAP/reference0.896570.146
41DAP/reference0.862090.16
42DAP/reference0.817830.082
43DAP/reference0.990160.608
47DAP/reference1.065071
52DAP/reference1.095650.459
57DAP/reference0.892790.199

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.93330.548
17DAP/reference1.103040.658
27DAP/reference1.27070.063
39DAP/reference1.301820.164
41DAP/reference1.179980.48
42DAP/reference1.18920.18
43DAP/reference1.022260.977
47DAP/reference0.999970.714
52DAP/reference1.206680.223
57DAP/reference0.860120.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092660.433
17DAP/reference1.255260.631
27DAP/referenceN/AN/A
39DAP/reference1.515250.014
41DAP/reference1.409180.296
42DAP/reference1.559220.258
43DAP/reference1.467790.053
47DAP/reference1.156050.324
52DAP/reference1.002160.946
57DAP/reference1.661020.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.79127
26DAP/20DAP0.999221
34DAP/26DAP0.953080.811
51DAP/34DAP0.919690.504
52DAP/51DAP0.994941
53DAP/52DAP0.96990.811
55DAP/53DAP1.098720.671
57DAP/55DAP1.160160.301
62DAP/57DAP1.013450.994
68DAP/62DAP1.161880.759
68DAP/14DAP1.221930.026

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.057920.306

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.999840.774
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.83503
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.65352
4-3/M82N/AN/A
5-3/M820.259810.23
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.17535
7-2/M82N/AN/A
9-3-2/M820.61289

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.006381
IL2-6/WTpooled0.78052
IL7-5/WTpooled0.49462
IL7-3/WTpooled0.62001
IL12-4/WTpooled1.157130.624
IL1-4/WTpooled0.869920.699
WT/WTpooled1.140550.85

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.911340.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.347580.724
DC3000/delta hrp 6h0.34637
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h0.781910.124

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.814560.025
DC3000 delta B/DC3000 delta AB0.937980.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03091
Var 0h2.641440.936
Var 12h I row2-row10.858450.565
Var 12h NI row2-row11.0760.649
Var 36h I row2-row10.900641
Var 36h NI row2-row10.824150.584
Var 60h I row2-row10.926190.952
Var 60h NI row2-row10.941220.866
Time course 0hI-0hNI1.077620.486
Time course 12hI-12hNI0.950030.592
Time course 36hI-36hNI1.114620.08
Time course 60hI-60hNI1.617450.053

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.533480.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.755130.181