Expression of 1-1-7.4.18.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23647 | 0.561 |
27DAP/17DAP | 1.35223 | 0.744 |
39DAP/27DAP | 0.95124 | 0.663 |
41DAP/39DAP | 1.44998 | 0.392 |
42DAP/41DAP | 0.97358 | 1 |
43DAP/42DAP | 1.38622 | 0.299 |
47DAP/43DAP | 1.66257 | 0.455 |
52DAP/47DAP | 0.69551 | 0.357 |
57DAP/52DAP | 1.28926 | 0.837 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98734 | 0.645 |
17DAP/reference | 1.06247 | 0.201 |
27DAP/reference | 1.0151 | 0.794 |
39DAP/reference | 1.03426 | 0.335 |
41DAP/reference | 1.06722 | 0.587 |
42DAP/reference | 0.97787 | 0.295 |
43DAP/reference | 1.0194 | 0.812 |
47DAP/reference | 0.93674 | 0.224 |
52DAP/reference | 0.88365 | 0.111 |
57DAP/reference | 0.84243 | 0.086 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.63388 | 0.055 |
27DAP/17DAP | 1.11044 | 0.842 |
39DAP/27DAP | 1.046 | 1 |
41DAP/39DAP | 1.24512 | 0.799 |
42DAP/41DAP | 0.83445 | 0.109 |
43DAP/42DAP | 0.76055 | 0.235 |
47DAP/43DAP | 1.33245 | 0.593 |
52DAP/47DAP | 0.98611 | 0.935 |
57DAP/52DAP | 1.48482 | 0.169 |
57DAP/7DAP | 0.97758 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04532 | 0.894 |
17DAP/reference | 1.09904 | 0.399 |
27DAP/reference | 0.81326 | 0.146 |
39DAP/reference | 1.13409 | 0.297 |
41DAP/reference | 0.93462 | 0.375 |
42DAP/reference | 1.09086 | 0.534 |
43DAP/reference | 1.15848 | 0.226 |
47DAP/reference | 1.08394 | 0.761 |
52DAP/reference | 1.12823 | 0.183 |
57DAP/reference | 1.17916 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02609 | 0.712 |
17DAP/reference | 0.99641 | 0.766 |
27DAP/reference | 0.88611 | 0.119 |
39DAP/reference | 0.99191 | 0.603 |
41DAP/reference | 0.91174 | 0.148 |
42DAP/reference | 0.90701 | 0.237 |
43DAP/reference | 0.93086 | 0.32 |
47DAP/reference | 0.92447 | 0.028 |
52DAP/reference | 1.05755 | 0.181 |
57DAP/reference | 1.08427 | 0.345 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0414 | 0.758 |
17DAP/reference | 1.12006 | 0.551 |
27DAP/reference | 1.22765 | 0.024 |
39DAP/reference | 1.14157 | 0.496 |
41DAP/reference | 1.33434 | 0.369 |
42DAP/reference | 0.95007 | 0.552 |
43DAP/reference | 1.28261 | 0.505 |
47DAP/reference | 0.9438 | 0.224 |
52DAP/reference | 1.11454 | 0.683 |
57DAP/reference | 0.76889 | 0.092 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09441 | 0.966 |
26DAP/20DAP | 1.0431 | 1 |
34DAP/26DAP | 0.90052 | 0.917 |
51DAP/34DAP | 0.95493 | 0.785 |
52DAP/51DAP | 1.17506 | 0.579 |
53DAP/52DAP | 1.01436 | 0.97 |
55DAP/53DAP | 1.20346 | 0.722 |
57DAP/55DAP | 1.09207 | 1 |
62DAP/57DAP | 1.00384 | 0.994 |
68DAP/62DAP | 0.86223 | 0.641 |
68DAP/14DAP | 0.8318 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.15905 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.89819 | 0.226 |
Immature Eggplant/Mature Eggplant | 0.77194 | |
Ripe Pepper/Ripe Tomato | 0.56075 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.97786 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99087 | 1 |
1-1-2/M82 | 0.8012 | 1 |
12-2/M82 | 0.92173 | |
12-4/M82 | 1.22698 | |
1-3/M82 | 0.87963 | |
2-1-1/M82 | 0.46129 | 0.683 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.12803 | 0.505 |
3-2/M82 | 0.96151 | 1 |
4-1-1/M82 | 1.08028 | 0.968 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.76798 | 0.698 |
4-3/M82 | 0.88334 | 0.46 |
5-3/M82 | 1.03412 | 1 |
6-2/M82 | 0.82814 | 0.497 |
6-3/M82 | 1.06936 | 1 |
7-1/M82 | 1.26145 | 1 |
7-2/M82 | 1.12957 | 1 |
9-3-2/M82 | 0.79243 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.73157 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.20176 | 0.557 |
IL1-4/WTpooled | 0.75048 | |
WT/WTpooled | 0.9348 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.29268 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.24229 | 0.875 |
DC3000/delta hrp 6h | 0.8526 | |
DC3000/delta hrp 12h | 1.03642 | 1 |
DC3000/delta hrp 24h | 1.0643 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90465 | 1 |
Exp 36h | 1.71331 | 1 |
Exp 60h | 1.22412 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0608 | 1 |
Var 0h | 0.95716 | 1 |
Var 12h I row2-row1 | 0.86698 | 0.467 |
Var 12h NI row2-row1 | 3.30109 | 1 |
Var 36h I row2-row1 | 1.18419 | 0.742 |
Var 36h NI row2-row1 | 1.00171 | |
Var 60h I row2-row1 | 0.84129 | 0.285 |
Var 60h NI row2-row1 | 0.7769 | 0.866 |
Time course 0hI-0hNI | 0.94909 | 0.745 |
Time course 12hI-12hNI | 0.91745 | 0.436 |
Time course 36hI-36hNI | 1.1783 | 0.114 |
Time course 60hI-60hNI | 2.32241 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05229 | 0.292 |
transgenic ySAMdc/azygous control (breaker) | 1.00627 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97026 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99014 | 0.694 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87325 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86704 | 1 |
Manapal/WT (break) | 0.94619 | 1 |
Manapal/WT (red) | 1.09558 | 0.222 |
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