Expression of 1-1-7.4.18.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.236470.561
27DAP/17DAP1.352230.744
39DAP/27DAP0.951240.663
41DAP/39DAP1.449980.392
42DAP/41DAP0.973581
43DAP/42DAP1.386220.299
47DAP/43DAP1.662570.455
52DAP/47DAP0.695510.357
57DAP/52DAP1.289260.837

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.987340.645
17DAP/reference1.062470.201
27DAP/reference1.01510.794
39DAP/reference1.034260.335
41DAP/reference1.067220.587
42DAP/reference0.977870.295
43DAP/reference1.01940.812
47DAP/reference0.936740.224
52DAP/reference0.883650.111
57DAP/reference0.842430.086

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.633880.055
27DAP/17DAP1.110440.842
39DAP/27DAP1.0461
41DAP/39DAP1.245120.799
42DAP/41DAP0.834450.109
43DAP/42DAP0.760550.235
47DAP/43DAP1.332450.593
52DAP/47DAP0.986110.935
57DAP/52DAP1.484820.169
57DAP/7DAP0.977581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045320.894
17DAP/reference1.099040.399
27DAP/reference0.813260.146
39DAP/reference1.134090.297
41DAP/reference0.934620.375
42DAP/reference1.090860.534
43DAP/reference1.158480.226
47DAP/reference1.083940.761
52DAP/reference1.128230.183
57DAP/reference1.179160.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.026090.712
17DAP/reference0.996410.766
27DAP/reference0.886110.119
39DAP/reference0.991910.603
41DAP/reference0.911740.148
42DAP/reference0.907010.237
43DAP/reference0.930860.32
47DAP/reference0.924470.028
52DAP/reference1.057550.181
57DAP/reference1.084270.345

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04140.758
17DAP/reference1.120060.551
27DAP/reference1.227650.024
39DAP/reference1.141570.496
41DAP/reference1.334340.369
42DAP/reference0.950070.552
43DAP/reference1.282610.505
47DAP/reference0.94380.224
52DAP/reference1.114540.683
57DAP/reference0.768890.092

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.094410.966
26DAP/20DAP1.04311
34DAP/26DAP0.900520.917
51DAP/34DAP0.954930.785
52DAP/51DAP1.175060.579
53DAP/52DAP1.014360.97
55DAP/53DAP1.203460.722
57DAP/55DAP1.092071
62DAP/57DAP1.003840.994
68DAP/62DAP0.862230.641
68DAP/14DAP0.83180.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.159051

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.898190.226
Immature Eggplant/Mature Eggplant0.77194
Ripe Pepper/Ripe Tomato0.560750.224
Mature Eggplant/Ripe Tomato0.977861

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.990871
1-1-2/M820.80121
12-2/M820.92173
12-4/M821.22698
1-3/M820.87963
2-1-1/M820.461290.683
2-1/M82N/AN/A
2-6/M821.128030.505
3-2/M820.961511
4-1-1/M821.080280.968
4-1/M82N/AN/A
4-3-2/M820.767980.698
4-3/M820.883340.46
5-3/M821.034121
6-2/M820.828140.497
6-3/M821.069361
7-1/M821.261451
7-2/M821.129571
9-3-2/M820.792430.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.731570.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.201760.557
IL1-4/WTpooled0.75048
WT/WTpooled0.93481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.292680.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.242290.875
DC3000/delta hrp 6h0.8526
DC3000/delta hrp 12h1.036421
DC3000/delta hrp 24h1.06430.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.904651
Exp 36h1.713311
Exp 60h1.224120.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.06081
Var 0h0.957161
Var 12h I row2-row10.866980.467
Var 12h NI row2-row13.301091
Var 36h I row2-row11.184190.742
Var 36h NI row2-row11.00171
Var 60h I row2-row10.841290.285
Var 60h NI row2-row10.77690.866
Time course 0hI-0hNI0.949090.745
Time course 12hI-12hNI0.917450.436
Time course 36hI-36hNI1.17830.114
Time course 60hI-60hNI2.322410.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.052290.292
transgenic ySAMdc/azygous control (breaker)1.006271
transgenic ySAMdc/azygous control (red)0.970261

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.990140.694

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.873250.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.867041
Manapal/WT (break)0.946191
Manapal/WT (red)1.095580.222