Expression of 1-1-7.4.18.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86811 | 0.586 |
27DAP/17DAP | 1.29718 | 0.829 |
39DAP/27DAP | 1.17994 | 0.82 |
41DAP/39DAP | 0.91737 | 0.772 |
42DAP/41DAP | 0.7274 | 0.774 |
43DAP/42DAP | 1.24474 | 1 |
47DAP/43DAP | 2.01836 | 0.193 |
52DAP/47DAP | 2.96186 | 0.032 |
57DAP/52DAP | 1.16718 | 0.93 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78943 | 0.033 |
17DAP/reference | 0.8786 | 0.097 |
27DAP/reference | 0.91191 | 0.24 |
39DAP/reference | 0.92141 | 0.184 |
41DAP/reference | 0.95181 | 0.542 |
42DAP/reference | 0.98379 | 0.287 |
43DAP/reference | 0.88663 | 0.084 |
47DAP/reference | 1.13887 | 0.353 |
52DAP/reference | 1.28624 | 0.056 |
57DAP/reference | 1.22429 | 0.07 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.94413 | 0.132 |
27DAP/17DAP | 1.35097 | 0.527 |
39DAP/27DAP | 0.8163 | 0.291 |
41DAP/39DAP | 1.20117 | 0.727 |
42DAP/41DAP | 0.57315 | 0.007 |
43DAP/42DAP | 1.1259 | 0.699 |
47DAP/43DAP | 1.07303 | 0.833 |
52DAP/47DAP | 1.39382 | 0.207 |
57DAP/52DAP | 0.90551 | 0.577 |
57DAP/7DAP | 1.14003 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04141 | 0.999 |
17DAP/reference | 0.93475 | 0.295 |
27DAP/reference | 1.09607 | 0.301 |
39DAP/reference | 1.00816 | 0.745 |
41DAP/reference | 0.94164 | 0.326 |
42DAP/reference | 1.21957 | 0.405 |
43DAP/reference | 1.09655 | 0.307 |
47DAP/reference | 1.00943 | 1 |
52DAP/reference | 1.10281 | 0.401 |
57DAP/reference | 1.24883 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.7484 | 0.012 |
17DAP/reference | 0.65947 | 0.004 |
27DAP/reference | 0.78172 | 0.038 |
39DAP/reference | 0.88937 | 0.129 |
41DAP/reference | 0.89438 | 0.156 |
42DAP/reference | 0.94993 | 0.355 |
43DAP/reference | 0.7607 | 0.036 |
47DAP/reference | 0.85427 | 0.06 |
52DAP/reference | 0.84744 | 0.012 |
57DAP/reference | 0.7363 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11573 | 0.758 |
17DAP/reference | 0.98962 | 0.763 |
27DAP/reference | 1.23231 | 0.531 |
39DAP/reference | 1.11396 | 0.13 |
41DAP/reference | 1.32447 | 0.12 |
42DAP/reference | 1.0003 | 1 |
43DAP/reference | 1.06241 | 0.855 |
47DAP/reference | 0.92039 | 0.018 |
52DAP/reference | 0.8769 | 0.296 |
57DAP/reference | 1.19833 | 0.141 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09648 | 0.966 |
26DAP/20DAP | 2.11018 | 0.102 |
34DAP/26DAP | 1.26273 | 1 |
51DAP/34DAP | 1.27823 | 0.883 |
52DAP/51DAP | 0.86487 | 1 |
53DAP/52DAP | 1.00243 | 0.868 |
55DAP/53DAP | 1.34277 | 0.781 |
57DAP/55DAP | 0.98403 | 0.902 |
62DAP/57DAP | 0.93556 | 0.994 |
68DAP/62DAP | 1.46653 | 0.481 |
68DAP/14DAP | 1.79303 | 0.038 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91258 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.02666 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.14068 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.15589 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.99209 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.60587 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.72965 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.89726 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.4404 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.1028 | |
IL1-4/WTpooled | 1.09698 | 1 |
WT/WTpooled | 1.45032 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.21424 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0665 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.128 | 1 |
DC3000/delta hrp 24h | 0.92366 | 0.387 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11138 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.10006 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.15659 | |
Var 0h | 0.87587 | 1 |
Var 12h I row2-row1 | 1.1108 | 0.324 |
Var 12h NI row2-row1 | 0.85069 | 1 |
Var 36h I row2-row1 | 1.08521 | 0.298 |
Var 36h NI row2-row1 | 1.15093 | |
Var 60h I row2-row1 | 0.59526 | 0.285 |
Var 60h NI row2-row1 | 0.62067 | 0.932 |
Time course 0hI-0hNI | 1.08076 | 0.719 |
Time course 12hI-12hNI | 1.49382 | 0.327 |
Time course 36hI-36hNI | 1.70409 | 0.063 |
Time course 60hI-60hNI | 10.1459 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 0.81094 | 1 |
transgenic ySAMdc/azygous control (red) | 1.19314 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97634 | 0.353 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.60912 | 0.241 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.78968 | 1 |
Manapal/WT (break) | 0.71001 | 0.299 |
Manapal/WT (red) | N/A | N/A |
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