Expression of 1-1-7.4.18.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.868110.586
27DAP/17DAP1.297180.829
39DAP/27DAP1.179940.82
41DAP/39DAP0.917370.772
42DAP/41DAP0.72740.774
43DAP/42DAP1.244741
47DAP/43DAP2.018360.193
52DAP/47DAP2.961860.032
57DAP/52DAP1.167180.93

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.789430.033
17DAP/reference0.87860.097
27DAP/reference0.911910.24
39DAP/reference0.921410.184
41DAP/reference0.951810.542
42DAP/reference0.983790.287
43DAP/reference0.886630.084
47DAP/reference1.138870.353
52DAP/reference1.286240.056
57DAP/reference1.224290.07

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.944130.132
27DAP/17DAP1.350970.527
39DAP/27DAP0.81630.291
41DAP/39DAP1.201170.727
42DAP/41DAP0.573150.007
43DAP/42DAP1.12590.699
47DAP/43DAP1.073030.833
52DAP/47DAP1.393820.207
57DAP/52DAP0.905510.577
57DAP/7DAP1.140031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.041410.999
17DAP/reference0.934750.295
27DAP/reference1.096070.301
39DAP/reference1.008160.745
41DAP/reference0.941640.326
42DAP/reference1.219570.405
43DAP/reference1.096550.307
47DAP/reference1.009431
52DAP/reference1.102810.401
57DAP/reference1.248830.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.74840.012
17DAP/reference0.659470.004
27DAP/reference0.781720.038
39DAP/reference0.889370.129
41DAP/reference0.894380.156
42DAP/reference0.949930.355
43DAP/reference0.76070.036
47DAP/reference0.854270.06
52DAP/reference0.847440.012
57DAP/reference0.73630.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.115730.758
17DAP/reference0.989620.763
27DAP/reference1.232310.531
39DAP/reference1.113960.13
41DAP/reference1.324470.12
42DAP/reference1.00031
43DAP/reference1.062410.855
47DAP/reference0.920390.018
52DAP/reference0.87690.296
57DAP/reference1.198330.141

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.096480.966
26DAP/20DAP2.110180.102
34DAP/26DAP1.262731
51DAP/34DAP1.278230.883
52DAP/51DAP0.864871
53DAP/52DAP1.002430.868
55DAP/53DAP1.342770.781
57DAP/55DAP0.984030.902
62DAP/57DAP0.935560.994
68DAP/62DAP1.466530.481
68DAP/14DAP1.793030.038

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.91258

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.026660.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.140680.224
Mature Eggplant/Ripe Tomato0.155890.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.99209
1-3/M82N/AN/A
2-1-1/M820.60587
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.72965
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.89726
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.4404
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.1028
IL1-4/WTpooled1.096981
WT/WTpooled1.45032

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.21424

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.06650.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.1281
DC3000/delta hrp 24h0.923660.387

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.111381
Exp 36hN/AN/A
Exp 60h1.100061

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.15659
Var 0h0.875871
Var 12h I row2-row11.11080.324
Var 12h NI row2-row10.850691
Var 36h I row2-row11.085210.298
Var 36h NI row2-row11.15093
Var 60h I row2-row10.595260.285
Var 60h NI row2-row10.620670.932
Time course 0hI-0hNI1.080760.719
Time course 12hI-12hNI1.493820.327
Time course 36hI-36hNI1.704090.063
Time course 60hI-60hNI10.14590.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)0.810941
transgenic ySAMdc/azygous control (red)1.193141

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.976340.353

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.609120.241

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.789681
Manapal/WT (break)0.710010.299
Manapal/WT (red)N/AN/A