Expression of 1-1-7.4.19.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.847880.226
27DAP/17DAP1.435270.874
39DAP/27DAP0.845730.537
41DAP/39DAP0.886130.54
42DAP/41DAP1.194130.938
43DAP/42DAP0.999110.937
47DAP/43DAP1.049130.943
52DAP/47DAP1.07460.842
57DAP/52DAP1.790190.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.902190.254
17DAP/reference1.282690.384
27DAP/reference1.12520.348
39DAP/reference1.595040.02
41DAP/reference1.265780.855
42DAP/reference1.35960.093
43DAP/reference0.937490.708
47DAP/reference0.830540.127
52DAP/reference1.580.01
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.299890.406
27DAP/17DAP0.906410.58
39DAP/27DAP1.031720.77
41DAP/39DAP1.160340.656
42DAP/41DAP0.855840.149
43DAP/42DAP0.996380.96
47DAP/43DAP1.150610.331
52DAP/47DAP0.817050.35
57DAP/52DAP1.064220.726
57DAP/7DAP1.251921

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.08270.564
17DAP/reference1.253760.297
27DAP/reference1.271280.013
39DAP/reference1.353920.007
41DAP/reference1.496180.015
42DAP/reference1.421290.016
43DAP/reference1.152770.325
47DAP/reference1.163350.247
52DAP/reference1.157790.266
57DAP/reference1.102470.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.062340.823
17DAP/reference1.180970.508
27DAP/reference1.549160.109
39DAP/reference1.184140.324
41DAP/reference1.585370.053
42DAP/reference1.371540.009
43DAP/reference1.147870.485
47DAP/reference1.333970.009
52DAP/reference1.255460.029
57DAP/reference0.98710.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.065710.793
17DAP/reference0.996860.751
27DAP/reference1.125590.237
39DAP/reference1.174240.33
41DAP/reference1.127720.205
42DAP/reference1.031830.775
43DAP/reference1.303080.109
47DAP/reference1.104710.519
52DAP/reference1.320090.113
57DAP/reference1.347620.037

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.039861
26DAP/20DAP1.456150.558
34DAP/26DAP1.154021
51DAP/34DAP1.255880.387
52DAP/51DAP1.234120.542
53DAP/52DAP0.984420.909
55DAP/53DAP1.028460.925
57DAP/55DAP1.054910.97
62DAP/57DAP0.754560.28
68DAP/62DAP0.853440.609
68DAP/14DAP1.829640.087

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.082831

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.560920.119
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.19844
Mature Eggplant/Ripe Tomato0.84043

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.851780.605
1-1-2/M821.176181
12-2/M820.835660.74
12-4/M820.79721
1-3/M821.13046
2-1-1/M820.89568
2-1/M820.84061
2-6/M820.960041
3-2/M821.061390.967
4-1-1/M821.244791
4-1/M820.74279
4-3-2/M821.163680.508
4-3/M821.029931
5-3/M821.414620.467
6-2/M821.02045
6-3/M821.017811
7-1/M821.034631
7-2/M821.332810.385
9-3-2/M821.03668

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.359150.277
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled2.212990.75
IL7-3/WTpooled1.71244
IL12-4/WTpooled1.315550.673
IL1-4/WTpooled1.010841
WT/WTpooled0.908211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.044851

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.095810.894
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.69117
DC3000/delta hrp 24h0.957410.725

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.36699

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015731
Var 0h0.173631
Var 12h I row2-row10.960350.77
Var 12h NI row2-row11.216110.649
Var 36h I row2-row10.822721
Var 36h NI row2-row10.590620.522
Var 60h I row2-row10.962410.285
Var 60h NI row2-row10.72880.63
Time course 0hI-0hNI0.911170.472
Time course 12hI-12hNI0.998331
Time course 36hI-36hNI1.23490.006
Time course 60hI-60hNI1.768030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.403941
transgenic ySAMdc/azygous control (red)0.744091

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.052320.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.241680.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.25090.164