Expression of 1-1-7.4.19.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84788 | 0.226 |
27DAP/17DAP | 1.43527 | 0.874 |
39DAP/27DAP | 0.84573 | 0.537 |
41DAP/39DAP | 0.88613 | 0.54 |
42DAP/41DAP | 1.19413 | 0.938 |
43DAP/42DAP | 0.99911 | 0.937 |
47DAP/43DAP | 1.04913 | 0.943 |
52DAP/47DAP | 1.0746 | 0.842 |
57DAP/52DAP | 1.79019 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90219 | 0.254 |
17DAP/reference | 1.28269 | 0.384 |
27DAP/reference | 1.1252 | 0.348 |
39DAP/reference | 1.59504 | 0.02 |
41DAP/reference | 1.26578 | 0.855 |
42DAP/reference | 1.3596 | 0.093 |
43DAP/reference | 0.93749 | 0.708 |
47DAP/reference | 0.83054 | 0.127 |
52DAP/reference | 1.58 | 0.01 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29989 | 0.406 |
27DAP/17DAP | 0.90641 | 0.58 |
39DAP/27DAP | 1.03172 | 0.77 |
41DAP/39DAP | 1.16034 | 0.656 |
42DAP/41DAP | 0.85584 | 0.149 |
43DAP/42DAP | 0.99638 | 0.96 |
47DAP/43DAP | 1.15061 | 0.331 |
52DAP/47DAP | 0.81705 | 0.35 |
57DAP/52DAP | 1.06422 | 0.726 |
57DAP/7DAP | 1.25192 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0827 | 0.564 |
17DAP/reference | 1.25376 | 0.297 |
27DAP/reference | 1.27128 | 0.013 |
39DAP/reference | 1.35392 | 0.007 |
41DAP/reference | 1.49618 | 0.015 |
42DAP/reference | 1.42129 | 0.016 |
43DAP/reference | 1.15277 | 0.325 |
47DAP/reference | 1.16335 | 0.247 |
52DAP/reference | 1.15779 | 0.266 |
57DAP/reference | 1.10247 | 0.571 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06234 | 0.823 |
17DAP/reference | 1.18097 | 0.508 |
27DAP/reference | 1.54916 | 0.109 |
39DAP/reference | 1.18414 | 0.324 |
41DAP/reference | 1.58537 | 0.053 |
42DAP/reference | 1.37154 | 0.009 |
43DAP/reference | 1.14787 | 0.485 |
47DAP/reference | 1.33397 | 0.009 |
52DAP/reference | 1.25546 | 0.029 |
57DAP/reference | 0.9871 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06571 | 0.793 |
17DAP/reference | 0.99686 | 0.751 |
27DAP/reference | 1.12559 | 0.237 |
39DAP/reference | 1.17424 | 0.33 |
41DAP/reference | 1.12772 | 0.205 |
42DAP/reference | 1.03183 | 0.775 |
43DAP/reference | 1.30308 | 0.109 |
47DAP/reference | 1.10471 | 0.519 |
52DAP/reference | 1.32009 | 0.113 |
57DAP/reference | 1.34762 | 0.037 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03986 | 1 |
26DAP/20DAP | 1.45615 | 0.558 |
34DAP/26DAP | 1.15402 | 1 |
51DAP/34DAP | 1.25588 | 0.387 |
52DAP/51DAP | 1.23412 | 0.542 |
53DAP/52DAP | 0.98442 | 0.909 |
55DAP/53DAP | 1.02846 | 0.925 |
57DAP/55DAP | 1.05491 | 0.97 |
62DAP/57DAP | 0.75456 | 0.28 |
68DAP/62DAP | 0.85344 | 0.609 |
68DAP/14DAP | 1.82964 | 0.087 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08283 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.56092 | 0.119 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.19844 | |
Mature Eggplant/Ripe Tomato | 0.84043 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.85178 | 0.605 |
1-1-2/M82 | 1.17618 | 1 |
12-2/M82 | 0.83566 | 0.74 |
12-4/M82 | 0.79721 | |
1-3/M82 | 1.13046 | |
2-1-1/M82 | 0.89568 | |
2-1/M82 | 0.84061 | |
2-6/M82 | 0.96004 | 1 |
3-2/M82 | 1.06139 | 0.967 |
4-1-1/M82 | 1.24479 | 1 |
4-1/M82 | 0.74279 | |
4-3-2/M82 | 1.16368 | 0.508 |
4-3/M82 | 1.02993 | 1 |
5-3/M82 | 1.41462 | 0.467 |
6-2/M82 | 1.02045 | |
6-3/M82 | 1.01781 | 1 |
7-1/M82 | 1.03463 | 1 |
7-2/M82 | 1.33281 | 0.385 |
9-3-2/M82 | 1.03668 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.35915 | 0.277 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 2.21299 | 0.75 |
IL7-3/WTpooled | 1.71244 | |
IL12-4/WTpooled | 1.31555 | 0.673 |
IL1-4/WTpooled | 1.01084 | 1 |
WT/WTpooled | 0.90821 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04485 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09581 | 0.894 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.69117 | |
DC3000/delta hrp 24h | 0.95741 | 0.725 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.36699 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01573 | 1 |
Var 0h | 0.17363 | 1 |
Var 12h I row2-row1 | 0.96035 | 0.77 |
Var 12h NI row2-row1 | 1.21611 | 0.649 |
Var 36h I row2-row1 | 0.82272 | 1 |
Var 36h NI row2-row1 | 0.59062 | 0.522 |
Var 60h I row2-row1 | 0.96241 | 0.285 |
Var 60h NI row2-row1 | 0.7288 | 0.63 |
Time course 0hI-0hNI | 0.91117 | 0.472 |
Time course 12hI-12hNI | 0.99833 | 1 |
Time course 36hI-36hNI | 1.2349 | 0.006 |
Time course 60hI-60hNI | 1.76803 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.40394 | 1 |
transgenic ySAMdc/azygous control (red) | 0.74409 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05232 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.24168 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.2509 | 0.164 |
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