Expression of 1-1-7.4.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.895960.511
27DAP/17DAP1.105230.88
39DAP/27DAP2.50160.021
41DAP/39DAP0.634990.07
42DAP/41DAP0.573920.774
43DAP/42DAP0.743230.556
47DAP/43DAP1.048621
52DAP/47DAP1.307730.76
57DAP/52DAP1.193420.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference2.534930.007
17DAP/reference1.145690.258
27DAP/reference1.104280.165
39DAP/reference0.924080.475
41DAP/reference1.076480.062
42DAP/reference1.419710.003
43DAP/reference0.855210.054
47DAP/reference1.140750.024
52DAP/reference1.131250.256
57DAP/reference1.096140.355

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.581730.041
27DAP/17DAP1.009491
39DAP/27DAP0.927990.579
41DAP/39DAP0.981760.968
42DAP/41DAP0.857460.234
43DAP/42DAP1.013810.746
47DAP/43DAP0.819260.037
52DAP/47DAP1.159160.568
57DAP/52DAP1.664320.052
57DAP/7DAP0.900811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.537110.024
17DAP/reference1.584060.014
27DAP/reference2.153080.007
39DAP/reference1.397050.008
41DAP/reference1.807050.009
42DAP/reference1.693840.046
43DAP/reference1.271940.256
47DAP/reference1.892780.014
52DAP/reference1.389820.043
57DAP/reference0.961040.28

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.912320.029
17DAP/reference1.451970.007
27DAP/reference1.960730.013
39DAP/reference2.009060.022
41DAP/reference1.72680.005
42DAP/reference2.490090.007
43DAP/reference1.07761
47DAP/reference1.32150.02
52DAP/reference1.261110.012
57DAP/reference0.976220.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.82950.015
17DAP/reference1.180030.17
27DAP/reference1.560330.017
39DAP/reference1.122360.032
41DAP/reference0.912990.148
42DAP/reference0.863280.22
43DAP/reference0.91780.246
47DAP/reference0.97820.509
52DAP/reference1.205830.369
57DAP/reference1.524890.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.938471
26DAP/20DAP1.628380.099
34DAP/26DAP0.907450.735
51DAP/34DAP0.701950.07
52DAP/51DAP1.422630.033
53DAP/52DAP1.009030.961
55DAP/53DAP1.018311
57DAP/55DAP1.181470.71
62DAP/57DAP1.066780.833
68DAP/62DAP1.002040.863
68DAP/14DAP1.548560.028

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.112810.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.974370.745
Mature Green Tomato/Ripe Tomato1.363330.018
Immature Eggplant/Mature Eggplant1.271810.072
Ripe Pepper/Ripe Tomato0.940721
Mature Eggplant/Ripe Tomato2.192850.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.824620.841
1-1-2/M821.077091
12-2/M820.963950.955
12-4/M821.075820.522
1-3/M821.730060.479
2-1-1/M820.735610.565
2-1/M820.44623
2-6/M820.733191
3-2/M821.061510.463
4-1-1/M820.973331
4-1/M821.415631
4-3-2/M820.745060.445
4-3/M820.853621
5-3/M821.202760.572
6-2/M821.736390.253
6-3/M821.201471
7-1/M820.902540.803
7-2/M820.928371
9-3-2/M821.01838

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.996781
IL2-6/WTpooled1.090710.659
IL7-5/WTpooled1.139620.792
IL7-3/WTpooled1.256251
IL12-4/WTpooled1.145930.624
IL1-4/WTpooled1.073361
WT/WTpooled0.967351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.756240.256

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.000691
DC3000/delta hrp 6h0.884880.95
DC3000/delta hrp 12h0.653441
DC3000/delta hrp 24h4.19180.018

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.065770.384
DC3000 delta B/DC3000 delta AB0.776530.152

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.951341
Exp 36h0.769110.623
Exp 60h0.788320.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.035731
Var 0h1.009641
Var 12h I row2-row11.403750.506
Var 12h NI row2-row11.07691
Var 36h I row2-row10.693941
Var 36h NI row2-row12.549841
Var 60h I row2-row10.976941
Var 60h NI row2-row11.131690.904
Time course 0hI-0hNI1.007061
Time course 12hI-12hNI0.797950.091
Time course 36hI-36hNI0.708680.023
Time course 60hI-60hNI0.384590.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.987990.862
transgenic ySAMdc/azygous control (breaker)1.202341
transgenic ySAMdc/azygous control (red)0.983331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.293410.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.935870.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.459960.307
Manapal/WT (break)0.892311
Manapal/WT (red)1.808070.137