Expression of 1-1-7.4.19.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.50631 | 0.029 |
27DAP/17DAP | 1.26671 | 0.86 |
39DAP/27DAP | 0.94346 | 0.663 |
41DAP/39DAP | 1.20214 | 0.859 |
42DAP/41DAP | 0.8034 | 0.774 |
43DAP/42DAP | 0.82442 | 0.705 |
47DAP/43DAP | 1.31117 | 0.42 |
52DAP/47DAP | 1.24514 | 0.667 |
57DAP/52DAP | 1.38366 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05533 | 0.788 |
17DAP/reference | 0.83909 | 0.017 |
27DAP/reference | 0.94238 | 0.339 |
39DAP/reference | 1.06867 | 0.326 |
41DAP/reference | 0.89782 | 0.065 |
42DAP/reference | 1.02893 | 0.755 |
43DAP/reference | 0.91632 | 0.316 |
47DAP/reference | 0.92896 | 0.077 |
52DAP/reference | 1.05226 | 0.633 |
57DAP/reference | 0.94983 | 0.377 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.73841 | 0.406 |
27DAP/17DAP | 1.36396 | 0.077 |
39DAP/27DAP | 1.13941 | 0.534 |
41DAP/39DAP | 1.20815 | 0.612 |
42DAP/41DAP | 1.03214 | 0.924 |
43DAP/42DAP | 0.82721 | 0.085 |
47DAP/43DAP | 1.03379 | 0.956 |
52DAP/47DAP | 1.03603 | 0.939 |
57DAP/52DAP | 1.20923 | 0.489 |
57DAP/7DAP | 1.36095 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80972 | 0.108 |
17DAP/reference | 0.99353 | 0.599 |
27DAP/reference | 1.20511 | 0.011 |
39DAP/reference | 0.82151 | 0.049 |
41DAP/reference | 0.75517 | 0.079 |
42DAP/reference | 0.96444 | 0.458 |
43DAP/reference | 1.00963 | 1 |
47DAP/reference | 0.91709 | 0.168 |
52DAP/reference | 0.97099 | 0.477 |
57DAP/reference | 1.15625 | 0.438 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08403 | 0.449 |
17DAP/reference | 0.86399 | 0.099 |
27DAP/reference | 1.00329 | 0.686 |
39DAP/reference | 0.98457 | 0.539 |
41DAP/reference | 0.93482 | 0.256 |
42DAP/reference | 0.92244 | 0.261 |
43DAP/reference | 1.13675 | 0.697 |
47DAP/reference | 0.98173 | 0.559 |
52DAP/reference | 0.9511 | 0.351 |
57DAP/reference | 0.91333 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84506 | 0.063 |
17DAP/reference | 0.90665 | 0.243 |
27DAP/reference | 0.9476 | 0.184 |
39DAP/reference | 0.87625 | 0.037 |
41DAP/reference | 0.98365 | 0.618 |
42DAP/reference | 0.86859 | 0.071 |
43DAP/reference | 0.84683 | 0.073 |
47DAP/reference | 0.89454 | 0.076 |
52DAP/reference | 1.29723 | 0.904 |
57DAP/reference | 1.14287 | 0.8 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04247 | 1 |
26DAP/20DAP | 1.20702 | 0.558 |
34DAP/26DAP | 1.10328 | 1 |
51DAP/34DAP | 1.79489 | 0.108 |
52DAP/51DAP | 0.96378 | 1 |
53DAP/52DAP | 1.28091 | 0.458 |
55DAP/53DAP | 0.97313 | 0.796 |
57DAP/55DAP | 1.09135 | 0.865 |
62DAP/57DAP | 0.83068 | 0.466 |
68DAP/62DAP | 1.14982 | 0.507 |
68DAP/14DAP | 0.94453 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18398 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.25643 | 0.06 |
Mature Green Tomato/Ripe Tomato | 3.24719 | 0.016 |
Immature Eggplant/Mature Eggplant | 5.20829 | 0.05 |
Ripe Pepper/Ripe Tomato | 13.3247 | 0.258 |
Mature Eggplant/Ripe Tomato | 2.51833 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.05047 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.65803 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.94761 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.92441 | |
7-2/M82 | 0.71261 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11151 | 1 |
IL2-6/WTpooled | 1.07837 | 0.46 |
IL7-5/WTpooled | 1.39256 | 0.792 |
IL7-3/WTpooled | 0.97441 | 1 |
IL12-4/WTpooled | 1.00963 | 1 |
IL1-4/WTpooled | 1.22944 | 1 |
WT/WTpooled | 1.02111 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05497 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | 1.39456 | 0.151 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.62323 | |
Var 0h | 1.0298 | 0.98 |
Var 12h I row2-row1 | 1.03757 | 0.795 |
Var 12h NI row2-row1 | 8.88788 | 1 |
Var 36h I row2-row1 | 0.84681 | |
Var 36h NI row2-row1 | 1.57486 | 0.482 |
Var 60h I row2-row1 | 1.10513 | 1 |
Var 60h NI row2-row1 | 1.00478 | |
Time course 0hI-0hNI | 0.90044 | 0.751 |
Time course 12hI-12hNI | 1.64493 | 0.507 |
Time course 36hI-36hNI | 8.32544 | 0.28 |
Time course 60hI-60hNI | 0.827 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05766 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.76937 | 0.134 |
transgenic ySAMdc/azygous control (red) | 0.62418 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98568 | 0.694 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87479 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.59316 | 0.096 |
Manapal/WT (break) | 2.32106 | 0.13 |
Manapal/WT (red) | 1.56988 | 0.413 |
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