Expression of 1-1-7.4.19.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.506310.029
27DAP/17DAP1.266710.86
39DAP/27DAP0.943460.663
41DAP/39DAP1.202140.859
42DAP/41DAP0.80340.774
43DAP/42DAP0.824420.705
47DAP/43DAP1.311170.42
52DAP/47DAP1.245140.667
57DAP/52DAP1.383660.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.055330.788
17DAP/reference0.839090.017
27DAP/reference0.942380.339
39DAP/reference1.068670.326
41DAP/reference0.897820.065
42DAP/reference1.028930.755
43DAP/reference0.916320.316
47DAP/reference0.928960.077
52DAP/reference1.052260.633
57DAP/reference0.949830.377

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.738410.406
27DAP/17DAP1.363960.077
39DAP/27DAP1.139410.534
41DAP/39DAP1.208150.612
42DAP/41DAP1.032140.924
43DAP/42DAP0.827210.085
47DAP/43DAP1.033790.956
52DAP/47DAP1.036030.939
57DAP/52DAP1.209230.489
57DAP/7DAP1.360950.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.809720.108
17DAP/reference0.993530.599
27DAP/reference1.205110.011
39DAP/reference0.821510.049
41DAP/reference0.755170.079
42DAP/reference0.964440.458
43DAP/reference1.009631
47DAP/reference0.917090.168
52DAP/reference0.970990.477
57DAP/reference1.156250.438

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084030.449
17DAP/reference0.863990.099
27DAP/reference1.003290.686
39DAP/reference0.984570.539
41DAP/reference0.934820.256
42DAP/reference0.922440.261
43DAP/reference1.136750.697
47DAP/reference0.981730.559
52DAP/reference0.95110.351
57DAP/reference0.913330.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.845060.063
17DAP/reference0.906650.243
27DAP/reference0.94760.184
39DAP/reference0.876250.037
41DAP/reference0.983650.618
42DAP/reference0.868590.071
43DAP/reference0.846830.073
47DAP/reference0.894540.076
52DAP/reference1.297230.904
57DAP/reference1.142870.8

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.042471
26DAP/20DAP1.207020.558
34DAP/26DAP1.103281
51DAP/34DAP1.794890.108
52DAP/51DAP0.963781
53DAP/52DAP1.280910.458
55DAP/53DAP0.973130.796
57DAP/55DAP1.091350.865
62DAP/57DAP0.830680.466
68DAP/62DAP1.149820.507
68DAP/14DAP0.944531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.183980.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.256430.06
Mature Green Tomato/Ripe Tomato3.247190.016
Immature Eggplant/Mature Eggplant5.208290.05
Ripe Pepper/Ripe Tomato13.32470.258
Mature Eggplant/Ripe Tomato2.518331

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.05047
12-2/M82N/AN/A
12-4/M820.65803
1-3/M82N/AN/A
2-1-1/M820.94761
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.92441
7-2/M820.71261
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.111511
IL2-6/WTpooled1.078370.46
IL7-5/WTpooled1.392560.792
IL7-3/WTpooled0.974411
IL12-4/WTpooled1.009631
IL1-4/WTpooled1.229441
WT/WTpooled1.021111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.054970.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24h1.394560.151

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.62323
Var 0h1.02980.98
Var 12h I row2-row11.037570.795
Var 12h NI row2-row18.887881
Var 36h I row2-row10.84681
Var 36h NI row2-row11.574860.482
Var 60h I row2-row11.105131
Var 60h NI row2-row11.00478
Time course 0hI-0hNI0.900440.751
Time course 12hI-12hNI1.644930.507
Time course 36hI-36hNI8.325440.28
Time course 60hI-60hNI0.8270.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.057660.798
transgenic ySAMdc/azygous control (breaker)0.769370.134
transgenic ySAMdc/azygous control (red)0.624181

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.985680.694

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.874790.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.593160.096
Manapal/WT (break)2.321060.13
Manapal/WT (red)1.569880.413