Expression of 1-1-7.4.19.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10174 | 0.534 |
27DAP/17DAP | 1.20371 | 0.833 |
39DAP/27DAP | 1.00226 | 0.857 |
41DAP/39DAP | 1.16653 | 0.638 |
42DAP/41DAP | 0.94858 | 1 |
43DAP/42DAP | 0.98578 | 0.909 |
47DAP/43DAP | 1.08016 | 0.702 |
52DAP/47DAP | 0.93724 | 0.803 |
57DAP/52DAP | 0.99478 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28784 | 0.019 |
17DAP/reference | 1.01005 | 1 |
27DAP/reference | 1.00739 | 0.996 |
39DAP/reference | 0.99599 | 0.957 |
41DAP/reference | 1.22517 | 0.012 |
42DAP/reference | 1.25278 | 0.005 |
43DAP/reference | 0.94119 | 0.331 |
47DAP/reference | 1.17347 | 0.007 |
52DAP/reference | 1.25857 | 0.045 |
57DAP/reference | 1.15969 | 0.22 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97679 | 0.663 |
27DAP/17DAP | 1.02832 | 0.905 |
39DAP/27DAP | 1.01974 | 0.698 |
41DAP/39DAP | 1.01006 | 0.909 |
42DAP/41DAP | 0.99712 | 0.902 |
43DAP/42DAP | 0.97483 | 0.597 |
47DAP/43DAP | 1.02962 | 0.889 |
52DAP/47DAP | 1.00713 | 0.986 |
57DAP/52DAP | 0.98069 | 0.73 |
57DAP/7DAP | 1.0225 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03222 | 0.776 |
17DAP/reference | 0.98071 | 0.253 |
27DAP/reference | 0.99207 | 0.571 |
39DAP/reference | 1.04888 | 0.032 |
41DAP/reference | 1.06902 | 0.389 |
42DAP/reference | 1.03064 | 0.308 |
43DAP/reference | 1.05634 | 0.087 |
47DAP/reference | 1.19466 | 0.089 |
52DAP/reference | 1.069 | 0.076 |
57DAP/reference | 1.04622 | 0.137 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03642 | 0.832 |
17DAP/reference | 1.17666 | 0.086 |
27DAP/reference | 1.38896 | 0.061 |
39DAP/reference | 1.59022 | 0.027 |
41DAP/reference | 1.78726 | 0.009 |
42DAP/reference | 1.45118 | 0.013 |
43DAP/reference | 1.13635 | 0.647 |
47DAP/reference | 1.17786 | 0.018 |
52DAP/reference | 1.34275 | 0.006 |
57DAP/reference | 1.19586 | 0.08 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96109 | 0.065 |
17DAP/reference | 1.0082 | 1 |
27DAP/reference | 1.04494 | 0.325 |
39DAP/reference | 1.0493 | 0.087 |
41DAP/reference | 1.02893 | 0.439 |
42DAP/reference | 1.11939 | 0.246 |
43DAP/reference | 1.24893 | 0.172 |
47DAP/reference | 1.1542 | 0.133 |
52DAP/reference | 1.00904 | 0.941 |
57DAP/reference | 2.1374 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01461 | 1 |
26DAP/20DAP | 0.97548 | 1 |
34DAP/26DAP | 1.00037 | 1 |
51DAP/34DAP | 0.97105 | 0.785 |
52DAP/51DAP | 0.98174 | 1 |
53DAP/52DAP | 1.03027 | 0.858 |
55DAP/53DAP | 1.06313 | 0.876 |
57DAP/55DAP | 1.15498 | 0.461 |
62DAP/57DAP | 0.93343 | 0.871 |
68DAP/62DAP | 0.69962 | 0.177 |
68DAP/14DAP | 1.06548 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.95205 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.72499 | 0.201 |
Mature Green Tomato/Ripe Tomato | 0.9261 | 0.446 |
Immature Eggplant/Mature Eggplant | 1.44783 | 0.078 |
Ripe Pepper/Ripe Tomato | 1.2957 | 1 |
Mature Eggplant/Ripe Tomato | 0.89807 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03629 | 1 |
1-1-2/M82 | 0.86624 | 1 |
12-2/M82 | 0.92241 | 0.955 |
12-4/M82 | 0.88935 | 0.619 |
1-3/M82 | 0.97456 | 0.378 |
2-1-1/M82 | 1.12529 | 1 |
2-1/M82 | 1.6996 | |
2-6/M82 | 0.97901 | 1 |
3-2/M82 | 1.02878 | |
4-1-1/M82 | 1.11246 | 0.968 |
4-1/M82 | 1.04914 | 1 |
4-3-2/M82 | 1.27631 | 1 |
4-3/M82 | 0.99146 | 1 |
5-3/M82 | 0.95419 | 1 |
6-2/M82 | 0.98005 | 1 |
6-3/M82 | 1.0182 | 1 |
7-1/M82 | 1.00718 | 1 |
7-2/M82 | 1.01841 | 1 |
9-3-2/M82 | 0.82295 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17036 | 0.277 |
IL2-6/WTpooled | 0.84034 | 0.473 |
IL7-5/WTpooled | 0.98948 | 1 |
IL7-3/WTpooled | 1.42428 | 1 |
IL12-4/WTpooled | 1.17693 | 0.737 |
IL1-4/WTpooled | 1.15255 | 1 |
WT/WTpooled | 0.92306 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06332 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06865 | 0.774 |
DC3000/delta hrp 6h | 1.4753 | 1 |
DC3000/delta hrp 12h | 1.05876 | 1 |
DC3000/delta hrp 24h | 1.0401 | 0.535 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09795 | 0.081 |
DC3000 delta B/DC3000 delta AB | 1.09904 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.98669 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.00998 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96756 | 1 |
Var 0h | 1.11518 | 0.98 |
Var 12h I row2-row1 | 1.18887 | 0.283 |
Var 12h NI row2-row1 | 1.03002 | 1 |
Var 36h I row2-row1 | 0.77527 | 0.805 |
Var 36h NI row2-row1 | 0.8699 | 0.61 |
Var 60h I row2-row1 | 1.10424 | 1 |
Var 60h NI row2-row1 | 1.164 | 0.904 |
Time course 0hI-0hNI | 1.04298 | 0.867 |
Time course 12hI-12hNI | 1.03629 | 0.77 |
Time course 36hI-36hNI | 0.99296 | 0.665 |
Time course 60hI-60hNI | 1.42744 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.59315 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.43895 | 0.132 |
transgenic ySAMdc/azygous control (red) | 1.21937 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98364 | 0.631 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.55533 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.18813 | 1 |
Manapal/WT (break) | 1.08504 | 1 |
Manapal/WT (red) | 1.03003 | 1 |
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