Expression of 1-1-7.4.19.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.101740.534
27DAP/17DAP1.203710.833
39DAP/27DAP1.002260.857
41DAP/39DAP1.166530.638
42DAP/41DAP0.948581
43DAP/42DAP0.985780.909
47DAP/43DAP1.080160.702
52DAP/47DAP0.937240.803
57DAP/52DAP0.994780.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.287840.019
17DAP/reference1.010051
27DAP/reference1.007390.996
39DAP/reference0.995990.957
41DAP/reference1.225170.012
42DAP/reference1.252780.005
43DAP/reference0.941190.331
47DAP/reference1.173470.007
52DAP/reference1.258570.045
57DAP/reference1.159690.22

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.976790.663
27DAP/17DAP1.028320.905
39DAP/27DAP1.019740.698
41DAP/39DAP1.010060.909
42DAP/41DAP0.997120.902
43DAP/42DAP0.974830.597
47DAP/43DAP1.029620.889
52DAP/47DAP1.007130.986
57DAP/52DAP0.980690.73
57DAP/7DAP1.02251

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.032220.776
17DAP/reference0.980710.253
27DAP/reference0.992070.571
39DAP/reference1.048880.032
41DAP/reference1.069020.389
42DAP/reference1.030640.308
43DAP/reference1.056340.087
47DAP/reference1.194660.089
52DAP/reference1.0690.076
57DAP/reference1.046220.137

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036420.832
17DAP/reference1.176660.086
27DAP/reference1.388960.061
39DAP/reference1.590220.027
41DAP/reference1.787260.009
42DAP/reference1.451180.013
43DAP/reference1.136350.647
47DAP/reference1.177860.018
52DAP/reference1.342750.006
57DAP/reference1.195860.08

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.961090.065
17DAP/reference1.00821
27DAP/reference1.044940.325
39DAP/reference1.04930.087
41DAP/reference1.028930.439
42DAP/reference1.119390.246
43DAP/reference1.248930.172
47DAP/reference1.15420.133
52DAP/reference1.009040.941
57DAP/reference2.13740.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.014611
26DAP/20DAP0.975481
34DAP/26DAP1.000371
51DAP/34DAP0.971050.785
52DAP/51DAP0.981741
53DAP/52DAP1.030270.858
55DAP/53DAP1.063130.876
57DAP/55DAP1.154980.461
62DAP/57DAP0.933430.871
68DAP/62DAP0.699620.177
68DAP/14DAP1.065480.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.952050.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.724990.201
Mature Green Tomato/Ripe Tomato0.92610.446
Immature Eggplant/Mature Eggplant1.447830.078
Ripe Pepper/Ripe Tomato1.29571
Mature Eggplant/Ripe Tomato0.898071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.036291
1-1-2/M820.866241
12-2/M820.922410.955
12-4/M820.889350.619
1-3/M820.974560.378
2-1-1/M821.125291
2-1/M821.6996
2-6/M820.979011
3-2/M821.02878
4-1-1/M821.112460.968
4-1/M821.049141
4-3-2/M821.276311
4-3/M820.991461
5-3/M820.954191
6-2/M820.980051
6-3/M821.01821
7-1/M821.007181
7-2/M821.018411
9-3-2/M820.82295

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.170360.277
IL2-6/WTpooled0.840340.473
IL7-5/WTpooled0.989481
IL7-3/WTpooled1.424281
IL12-4/WTpooled1.176930.737
IL1-4/WTpooled1.152551
WT/WTpooled0.923061

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.06332

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.068650.774
DC3000/delta hrp 6h1.47531
DC3000/delta hrp 12h1.058761
DC3000/delta hrp 24h1.04010.535

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.097950.081
DC3000 delta B/DC3000 delta AB1.099040.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.986691
Exp 36hN/AN/A
Exp 60h1.009980.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.967561
Var 0h1.115180.98
Var 12h I row2-row11.188870.283
Var 12h NI row2-row11.030021
Var 36h I row2-row10.775270.805
Var 36h NI row2-row10.86990.61
Var 60h I row2-row11.104241
Var 60h NI row2-row11.1640.904
Time course 0hI-0hNI1.042980.867
Time course 12hI-12hNI1.036290.77
Time course 36hI-36hNI0.992960.665
Time course 60hI-60hNI1.427440.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.593150.408
transgenic ySAMdc/azygous control (breaker)0.438950.132
transgenic ySAMdc/azygous control (red)1.219370.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.983640.631

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.555330.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.188131
Manapal/WT (break)1.085041
Manapal/WT (red)1.030031