Expression of 1-1-7.4.19.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082560.893
27DAP/17DAP1.064761
39DAP/27DAP0.913940.583
41DAP/39DAP1.057570.67
42DAP/41DAP1.085710.954
43DAP/42DAP0.944340.883
47DAP/43DAP1.25340.481
52DAP/47DAP1.052440.934
57DAP/52DAP1.181670.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.191230.11
17DAP/reference1.210440.132
27DAP/reference1.2340.15
39DAP/reference1.104760.286
41DAP/reference1.153890.111
42DAP/reference1.267310.001
43DAP/reference1.025430.928
47DAP/reference1.111760.096
52DAP/reference1.115630.217
57DAP/reference0.923320.262

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.048050.515
27DAP/17DAP1.048170.852
39DAP/27DAP1.043560.672
41DAP/39DAP0.942690.747
42DAP/41DAP1.081260.415
43DAP/42DAP1.045340.627
47DAP/43DAP1.023540.92
52DAP/47DAP1.181910.428
57DAP/52DAP1.180090.303
57DAP/7DAP1.070041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.254670.185
17DAP/reference1.605830.007
27DAP/reference1.690260.006
39DAP/reference1.42680.391
41DAP/reference1.598720.037
42DAP/reference1.708190.009
43DAP/reference1.401750.056
47DAP/reference1.165890.279
52DAP/reference1.217310.086
57DAP/reference1.259060.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.327670.053
17DAP/reference1.484950.066
27DAP/reference1.213870.131
39DAP/reference1.148930.066
41DAP/reference1.197250.109
42DAP/reference1.085880.583
43DAP/reference1.406040.205
47DAP/reference0.978370.5
52DAP/reference1.383620.038
57DAP/reference1.534280.026

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.318150.053
17DAP/reference1.087520.572
27DAP/reference1.209080.105
39DAP/reference1.010280.935
41DAP/reference1.279370.012
42DAP/reference1.592640.009
43DAP/reference1.504570.008
47DAP/reference1.186250.099
52DAP/reference1.821330.06
57DAP/reference1.05060.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.851091
26DAP/20DAP0.97291
34DAP/26DAP1.16370.819
51DAP/34DAP1.010381
52DAP/51DAP1.208760.207
53DAP/52DAP0.844410.06
55DAP/53DAP1.107720.608
57DAP/55DAP1.002380.923
62DAP/57DAP1.147190.8
68DAP/62DAP1.212510.977
68DAP/14DAP0.927911

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.703590.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.800120.148
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.512650.224
Mature Eggplant/Ripe Tomato0.266320.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.134940.574
1-1-2/M821.149351
12-2/M821.21161
12-4/M820.95892
1-3/M821.12246
2-1-1/M82N/AN/A
2-1/M820.53580.322
2-6/M821.33101
3-2/M821.046840.463
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.459810.487
4-3/M820.48411
5-3/M821.10771
6-2/M821.83960.253
6-3/M821.053811
7-1/M820.728940.803
7-2/M820.843390.881
9-3-2/M821.01141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.330.277
IL2-6/WTpooled0.854080.473
IL7-5/WTpooled0.923561
IL7-3/WTpooled1.493031
IL12-4/WTpooled0.89920.71
IL1-4/WTpooled1.235941
WT/WTpooled1.009671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.905770.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.914361
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.076621
DC3000/delta hrp 24h1.209550.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.904860.273
DC3000 delta B/DC3000 delta AB1.0810.443

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.953161
Exp 36h1.09011
Exp 60h0.88960.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001561
Var 0h0.931931
Var 12h I row2-row10.89450.705
Var 12h NI row2-row10.943470.713
Var 36h I row2-row10.946851
Var 36h NI row2-row11.133981
Var 60h I row2-row11.05711
Var 60h NI row2-row11.033141
Time course 0hI-0hNI1.104630.764
Time course 12hI-12hNI0.978320.847
Time course 36hI-36hNI0.890190.096
Time course 60hI-60hNI0.423490.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.867640.3
transgenic ySAMdc/azygous control (breaker)1.997860.161
transgenic ySAMdc/azygous control (red)1.261840.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.912810.043

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.871440.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.179161