Expression of 1-1-7.4.19.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08256 | 0.893 |
27DAP/17DAP | 1.06476 | 1 |
39DAP/27DAP | 0.91394 | 0.583 |
41DAP/39DAP | 1.05757 | 0.67 |
42DAP/41DAP | 1.08571 | 0.954 |
43DAP/42DAP | 0.94434 | 0.883 |
47DAP/43DAP | 1.2534 | 0.481 |
52DAP/47DAP | 1.05244 | 0.934 |
57DAP/52DAP | 1.18167 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19123 | 0.11 |
17DAP/reference | 1.21044 | 0.132 |
27DAP/reference | 1.234 | 0.15 |
39DAP/reference | 1.10476 | 0.286 |
41DAP/reference | 1.15389 | 0.111 |
42DAP/reference | 1.26731 | 0.001 |
43DAP/reference | 1.02543 | 0.928 |
47DAP/reference | 1.11176 | 0.096 |
52DAP/reference | 1.11563 | 0.217 |
57DAP/reference | 0.92332 | 0.262 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04805 | 0.515 |
27DAP/17DAP | 1.04817 | 0.852 |
39DAP/27DAP | 1.04356 | 0.672 |
41DAP/39DAP | 0.94269 | 0.747 |
42DAP/41DAP | 1.08126 | 0.415 |
43DAP/42DAP | 1.04534 | 0.627 |
47DAP/43DAP | 1.02354 | 0.92 |
52DAP/47DAP | 1.18191 | 0.428 |
57DAP/52DAP | 1.18009 | 0.303 |
57DAP/7DAP | 1.07004 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25467 | 0.185 |
17DAP/reference | 1.60583 | 0.007 |
27DAP/reference | 1.69026 | 0.006 |
39DAP/reference | 1.4268 | 0.391 |
41DAP/reference | 1.59872 | 0.037 |
42DAP/reference | 1.70819 | 0.009 |
43DAP/reference | 1.40175 | 0.056 |
47DAP/reference | 1.16589 | 0.279 |
52DAP/reference | 1.21731 | 0.086 |
57DAP/reference | 1.25906 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32767 | 0.053 |
17DAP/reference | 1.48495 | 0.066 |
27DAP/reference | 1.21387 | 0.131 |
39DAP/reference | 1.14893 | 0.066 |
41DAP/reference | 1.19725 | 0.109 |
42DAP/reference | 1.08588 | 0.583 |
43DAP/reference | 1.40604 | 0.205 |
47DAP/reference | 0.97837 | 0.5 |
52DAP/reference | 1.38362 | 0.038 |
57DAP/reference | 1.53428 | 0.026 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.31815 | 0.053 |
17DAP/reference | 1.08752 | 0.572 |
27DAP/reference | 1.20908 | 0.105 |
39DAP/reference | 1.01028 | 0.935 |
41DAP/reference | 1.27937 | 0.012 |
42DAP/reference | 1.59264 | 0.009 |
43DAP/reference | 1.50457 | 0.008 |
47DAP/reference | 1.18625 | 0.099 |
52DAP/reference | 1.82133 | 0.06 |
57DAP/reference | 1.0506 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.85109 | 1 |
26DAP/20DAP | 0.9729 | 1 |
34DAP/26DAP | 1.1637 | 0.819 |
51DAP/34DAP | 1.01038 | 1 |
52DAP/51DAP | 1.20876 | 0.207 |
53DAP/52DAP | 0.84441 | 0.06 |
55DAP/53DAP | 1.10772 | 0.608 |
57DAP/55DAP | 1.00238 | 0.923 |
62DAP/57DAP | 1.14719 | 0.8 |
68DAP/62DAP | 1.21251 | 0.977 |
68DAP/14DAP | 0.92791 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70359 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.80012 | 0.148 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.51265 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.26632 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13494 | 0.574 |
1-1-2/M82 | 1.14935 | 1 |
12-2/M82 | 1.2116 | 1 |
12-4/M82 | 0.95892 | |
1-3/M82 | 1.12246 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 0.5358 | 0.322 |
2-6/M82 | 1.33101 | |
3-2/M82 | 1.04684 | 0.463 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.45981 | 0.487 |
4-3/M82 | 0.48411 | |
5-3/M82 | 1.1077 | 1 |
6-2/M82 | 1.8396 | 0.253 |
6-3/M82 | 1.05381 | 1 |
7-1/M82 | 0.72894 | 0.803 |
7-2/M82 | 0.84339 | 0.881 |
9-3-2/M82 | 1.01141 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.33 | 0.277 |
IL2-6/WTpooled | 0.85408 | 0.473 |
IL7-5/WTpooled | 0.92356 | 1 |
IL7-3/WTpooled | 1.49303 | 1 |
IL12-4/WTpooled | 0.8992 | 0.71 |
IL1-4/WTpooled | 1.23594 | 1 |
WT/WTpooled | 1.00967 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90577 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91436 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.07662 | 1 |
DC3000/delta hrp 24h | 1.20955 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.90486 | 0.273 |
DC3000 delta B/DC3000 delta AB | 1.081 | 0.443 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95316 | 1 |
Exp 36h | 1.0901 | 1 |
Exp 60h | 0.8896 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00156 | 1 |
Var 0h | 0.93193 | 1 |
Var 12h I row2-row1 | 0.8945 | 0.705 |
Var 12h NI row2-row1 | 0.94347 | 0.713 |
Var 36h I row2-row1 | 0.94685 | 1 |
Var 36h NI row2-row1 | 1.13398 | 1 |
Var 60h I row2-row1 | 1.0571 | 1 |
Var 60h NI row2-row1 | 1.03314 | 1 |
Time course 0hI-0hNI | 1.10463 | 0.764 |
Time course 12hI-12hNI | 0.97832 | 0.847 |
Time course 36hI-36hNI | 0.89019 | 0.096 |
Time course 60hI-60hNI | 0.42349 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86764 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.99786 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.26184 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91281 | 0.043 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87144 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.17916 | 1 |
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