Expression of 1-1-7.4.2.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80416 | 0.265 |
27DAP/17DAP | 1.13813 | 0.871 |
39DAP/27DAP | 1.38376 | 0.363 |
41DAP/39DAP | 0.88665 | 0.539 |
42DAP/41DAP | 1.20799 | 0.786 |
43DAP/42DAP | 1.23731 | 1 |
47DAP/43DAP | 0.8716 | 0.562 |
52DAP/47DAP | 0.90995 | 0.734 |
57DAP/52DAP | 1.011 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04638 | 0.76 |
17DAP/reference | 0.6894 | 0.009 |
27DAP/reference | 0.85436 | 0.101 |
39DAP/reference | 0.80485 | 0.048 |
41DAP/reference | 0.63433 | 0.008 |
42DAP/reference | 1.09509 | 0.276 |
43DAP/reference | 1.00506 | 0.942 |
47DAP/reference | 1.04914 | 0.495 |
52DAP/reference | 1.24834 | 0.036 |
57DAP/reference | 1.32438 | 0.015 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13971 | 0.699 |
27DAP/17DAP | 1.51455 | 0.751 |
39DAP/27DAP | 1.93411 | |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 0.35309 | |
43DAP/42DAP | 1.83534 | 0.554 |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 1.86159 | 0.271 |
57DAP/52DAP | 0.90525 | |
57DAP/7DAP | 1.19951 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42928 | 0.04 |
17DAP/reference | 1.10794 | 0.399 |
27DAP/reference | 1.11468 | 0.246 |
39DAP/reference | 1.23118 | 0.028 |
41DAP/reference | 1.18571 | 0.08 |
42DAP/reference | 1.31474 | 0.037 |
43DAP/reference | 1.33529 | 0.012 |
47DAP/reference | 1.28657 | 0.062 |
52DAP/reference | 1.29588 | 0.02 |
57DAP/reference | 1.19084 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11268 | 0.605 |
17DAP/reference | 0.95776 | 0.434 |
27DAP/reference | 1.22167 | 0.09 |
39DAP/reference | 1.12463 | 0.686 |
41DAP/reference | 1.11041 | 0.471 |
42DAP/reference | 1.09623 | 0.826 |
43DAP/reference | 0.78179 | 0.058 |
47DAP/reference | 0.95997 | 0.368 |
52DAP/reference | 1.03204 | 0.702 |
57DAP/reference | 0.82852 | 0.05 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37376 | 0.045 |
17DAP/reference | 1.04649 | 0.792 |
27DAP/reference | 0.92284 | 0.218 |
39DAP/reference | 1.10267 | 0.307 |
41DAP/reference | 1.09906 | 0.521 |
42DAP/reference | 1.29947 | 0.078 |
43DAP/reference | 1.31496 | 0.119 |
47DAP/reference | 1.09535 | 0.461 |
52DAP/reference | 1.14001 | 0.398 |
57DAP/reference | 1.264 | 0.298 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98343 | 1 |
26DAP/20DAP | 1.18554 | 0.85 |
34DAP/26DAP | 1.56294 | |
51DAP/34DAP | 0.88672 | 0.532 |
52DAP/51DAP | 1.49173 | 0.792 |
53DAP/52DAP | 0.70474 | 0.111 |
55DAP/53DAP | 1.22229 | 0.948 |
57DAP/55DAP | 0.79475 | 0.398 |
62DAP/57DAP | 1.23392 | 0.303 |
68DAP/62DAP | 1.67877 | 0.015 |
68DAP/14DAP | 1.73744 | 0.049 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.4969 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.50115 | 0.162 |
Mature Green Tomato/Ripe Tomato | 0.95096 | 0.611 |
Immature Eggplant/Mature Eggplant | 0.83355 | 0.329 |
Ripe Pepper/Ripe Tomato | 0.63136 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.75024 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87708 | 0.907 |
1-1-2/M82 | 1.03128 | 1 |
12-2/M82 | 0.91495 | 0.955 |
12-4/M82 | 1.20926 | 1 |
1-3/M82 | 1.46002 | 0.277 |
2-1-1/M82 | 1.01907 | 1 |
2-1/M82 | 1.01252 | 1 |
2-6/M82 | 1.27498 | 0.355 |
3-2/M82 | 1.00539 | 1 |
4-1-1/M82 | 1.18814 | 1 |
4-1/M82 | 1.23429 | 1 |
4-3-2/M82 | 1.53277 | 0.241 |
4-3/M82 | 1.41643 | 1 |
5-3/M82 | 1.15863 | 1 |
6-2/M82 | 1.15463 | |
6-3/M82 | 0.70185 | 0.982 |
7-1/M82 | 1.02577 | 1 |
7-2/M82 | 1.20802 | 0.324 |
9-3-2/M82 | 1.48485 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.90073 | |
IL2-6/WTpooled | 0.74324 | 0.473 |
IL7-5/WTpooled | 1.1877 | 0.792 |
IL7-3/WTpooled | 1.13785 | 0.362 |
IL12-4/WTpooled | 0.97107 | 1 |
IL1-4/WTpooled | 0.97657 | 0.562 |
WT/WTpooled | 0.98047 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03315 | 0.921 |
DC3000/delta hrp 6h | 0.99295 | 0.95 |
DC3000/delta hrp 12h | 1.12825 | 1 |
DC3000/delta hrp 24h | 1.23586 | 0.054 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.19514 | 1 |
Exp 36h | 1.15474 | 1 |
Exp 60h | 1.07436 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05298 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 1.36326 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.10922 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.18147 | 0.066 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.63296 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.79057 | 1 |
Manapal/WT (break) | 0.9886 | 1 |
Manapal/WT (red) | 0.62427 | 0.181 |
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