Expression of 1-1-7.4.2.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21503 | 0.545 |
27DAP/17DAP | 0.50795 | 0.032 |
39DAP/27DAP | 0.6146 | 0.247 |
41DAP/39DAP | 0.52933 | 0.041 |
42DAP/41DAP | 0.62086 | 0.774 |
43DAP/42DAP | 1.3995 | 0.501 |
47DAP/43DAP | 0.50448 | 0.049 |
52DAP/47DAP | 1.08686 | 0.873 |
57DAP/52DAP | 1.10066 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24017 | 0.139 |
17DAP/reference | 0.97491 | 0.597 |
27DAP/reference | 0.88559 | 0.359 |
39DAP/reference | 0.67651 | 0.044 |
41DAP/reference | 0.46075 | 0.01 |
42DAP/reference | 0.56527 | 0.001 |
43DAP/reference | 0.29166 | 0.012 |
47DAP/reference | 0.28528 | 0.001 |
52DAP/reference | 0.30315 | 0.012 |
57DAP/reference | 0.39813 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.80313 | 0.036 |
27DAP/17DAP | 0.79723 | 0.363 |
39DAP/27DAP | 0.28912 | 0.028 |
41DAP/39DAP | 1.54761 | 0.355 |
42DAP/41DAP | 0.82451 | 0.119 |
43DAP/42DAP | 0.40344 | 0.022 |
47DAP/43DAP | 0.62176 | 0.008 |
52DAP/47DAP | 0.80695 | 0.22 |
57DAP/52DAP | 0.82105 | 0.339 |
57DAP/7DAP | 0.21216 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.04082 | 0.024 |
17DAP/reference | 1.32631 | 0.008 |
27DAP/reference | 0.86349 | 0.146 |
39DAP/reference | 0.86594 | 0.198 |
41DAP/reference | 0.53344 | 0.012 |
42DAP/reference | 0.40688 | 0.015 |
43DAP/reference | 0.42886 | 0.011 |
47DAP/reference | 0.34619 | 0.026 |
52DAP/reference | 0.74044 | 0.043 |
57DAP/reference | 0.7602 | 0.042 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02126 | 0.884 |
17DAP/reference | 0.99132 | 0.536 |
27DAP/reference | 1.24043 | 0.316 |
39DAP/reference | 0.67529 | 0.042 |
41DAP/reference | 0.75054 | 0.04 |
42DAP/reference | 0.56304 | 0.013 |
43DAP/reference | 0.32098 | 0.003 |
47DAP/reference | 0.37802 | 0.01 |
52DAP/reference | 0.4191 | 0.003 |
57DAP/reference | 0.20506 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.37746 | 0.015 |
17DAP/reference | 3.19486 | 0.111 |
27DAP/reference | 2.95743 | 0.014 |
39DAP/reference | 2.20785 | 0.005 |
41DAP/reference | 1.48079 | 0.023 |
42DAP/reference | 0.97094 | 0.671 |
43DAP/reference | 1.12117 | 0.634 |
47DAP/reference | 0.55746 | 0.005 |
52DAP/reference | 0.50749 | 0.068 |
57DAP/reference | 2.852 | 0.014 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.31094 | 0.966 |
26DAP/20DAP | 0.92581 | 1 |
34DAP/26DAP | 0.79416 | 0.18 |
51DAP/34DAP | 0.71379 | 0.104 |
52DAP/51DAP | 0.93587 | 1 |
53DAP/52DAP | 0.9288 | 0.868 |
55DAP/53DAP | 1.02092 | 0.964 |
57DAP/55DAP | 0.81335 | 0.202 |
62DAP/57DAP | 1.20522 | 0.303 |
68DAP/62DAP | 1.76542 | 0.206 |
68DAP/14DAP | 0.7396 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.65363 | 0.055 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.30863 | 0.058 |
Mature Green Tomato/Ripe Tomato | 11.3035 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.46246 | 0.062 |
Ripe Pepper/Ripe Tomato | 10.8604 | 0.256 |
Mature Eggplant/Ripe Tomato | 41.3849 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.94945 | 1 |
12-2/M82 | 0.17784 | |
12-4/M82 | 0.86401 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.44112 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.6752 | 0.395 |
4-1-1/M82 | 1.06075 | |
4-1/M82 | 2.15108 | |
4-3-2/M82 | 2.97442 | 0.241 |
4-3/M82 | N/A | N/A |
5-3/M82 | 3.49011 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.13485 | 0.741 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.66333 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.65466 | 0.358 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.24438 | 1 |
IL12-4/WTpooled | 1.09028 | 0.646 |
IL1-4/WTpooled | 0.90162 | |
WT/WTpooled | 0.9959 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.06393 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97572 | 1 |
DC3000/delta hrp 6h | 0.77509 | 0.915 |
DC3000/delta hrp 12h | 1.03319 | 1 |
DC3000/delta hrp 24h | 0.99311 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.78366 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.53988 | 0.041 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95408 | 1 |
Exp 36h | 0.96322 | 0.879 |
Exp 60h | 1.03121 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94124 | 1 |
Var 0h | 1.03866 | 1 |
Var 12h I row2-row1 | 0.93896 | 0.77 |
Var 12h NI row2-row1 | 1.04605 | 1 |
Var 36h I row2-row1 | 1.11413 | 0.908 |
Var 36h NI row2-row1 | 0.97059 | 0.791 |
Var 60h I row2-row1 | 1.39738 | 0.562 |
Var 60h NI row2-row1 | 1.05127 | 1 |
Time course 0hI-0hNI | 0.93153 | 0.545 |
Time course 12hI-12hNI | 0.98643 | 0.95 |
Time course 36hI-36hNI | 1.06121 | 0.58 |
Time course 60hI-60hNI | 0.52699 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.1389 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 5.42954 | 0.162 |
transgenic ySAMdc/azygous control (red) | 2.02971 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.60191 | 0.11 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.78672 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 4.77951 | 0.096 |
Manapal/WT (break) | 8.93053 | 0.183 |
Manapal/WT (red) | 11.4831 | 0.137 |
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