Expression of 1-1-7.4.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.215030.545
27DAP/17DAP0.507950.032
39DAP/27DAP0.61460.247
41DAP/39DAP0.529330.041
42DAP/41DAP0.620860.774
43DAP/42DAP1.39950.501
47DAP/43DAP0.504480.049
52DAP/47DAP1.086860.873
57DAP/52DAP1.100661

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.240170.139
17DAP/reference0.974910.597
27DAP/reference0.885590.359
39DAP/reference0.676510.044
41DAP/reference0.460750.01
42DAP/reference0.565270.001
43DAP/reference0.291660.012
47DAP/reference0.285280.001
52DAP/reference0.303150.012
57DAP/reference0.398130.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.803130.036
27DAP/17DAP0.797230.363
39DAP/27DAP0.289120.028
41DAP/39DAP1.547610.355
42DAP/41DAP0.824510.119
43DAP/42DAP0.403440.022
47DAP/43DAP0.621760.008
52DAP/47DAP0.806950.22
57DAP/52DAP0.821050.339
57DAP/7DAP0.212160.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.040820.024
17DAP/reference1.326310.008
27DAP/reference0.863490.146
39DAP/reference0.865940.198
41DAP/reference0.533440.012
42DAP/reference0.406880.015
43DAP/reference0.428860.011
47DAP/reference0.346190.026
52DAP/reference0.740440.043
57DAP/reference0.76020.042

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.021260.884
17DAP/reference0.991320.536
27DAP/reference1.240430.316
39DAP/reference0.675290.042
41DAP/reference0.750540.04
42DAP/reference0.563040.013
43DAP/reference0.320980.003
47DAP/reference0.378020.01
52DAP/reference0.41910.003
57DAP/reference0.205060.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.377460.015
17DAP/reference3.194860.111
27DAP/reference2.957430.014
39DAP/reference2.207850.005
41DAP/reference1.480790.023
42DAP/reference0.970940.671
43DAP/reference1.121170.634
47DAP/reference0.557460.005
52DAP/reference0.507490.068
57DAP/reference2.8520.014

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.310940.966
26DAP/20DAP0.925811
34DAP/26DAP0.794160.18
51DAP/34DAP0.713790.104
52DAP/51DAP0.935871
53DAP/52DAP0.92880.868
55DAP/53DAP1.020920.964
57DAP/55DAP0.813350.202
62DAP/57DAP1.205220.303
68DAP/62DAP1.765420.206
68DAP/14DAP0.73960.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.653630.055

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.308630.058
Mature Green Tomato/Ripe Tomato11.30350.015
Immature Eggplant/Mature Eggplant0.462460.062
Ripe Pepper/Ripe Tomato10.86040.256
Mature Eggplant/Ripe Tomato41.38490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.949451
12-2/M820.17784
12-4/M820.864011
1-3/M82N/AN/A
2-1-1/M820.44112
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.67520.395
4-1-1/M821.06075
4-1/M822.15108
4-3-2/M822.974420.241
4-3/M82N/AN/A
5-3/M823.490110.572
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.134850.741
7-2/M82N/AN/A
9-3-2/M821.663331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.654660.358
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.244381
IL12-4/WTpooled1.090280.646
IL1-4/WTpooled0.90162
WT/WTpooled0.99591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.063931

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.975721
DC3000/delta hrp 6h0.775090.915
DC3000/delta hrp 12h1.033191
DC3000/delta hrp 24h0.993111

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.783660.025
DC3000 delta B/DC3000 delta AB0.539880.041

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.954081
Exp 36h0.963220.879
Exp 60h1.031211

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.941241
Var 0h1.038661
Var 12h I row2-row10.938960.77
Var 12h NI row2-row11.046051
Var 36h I row2-row11.114130.908
Var 36h NI row2-row10.970590.791
Var 60h I row2-row11.397380.562
Var 60h NI row2-row11.051271
Time course 0hI-0hNI0.931530.545
Time course 12hI-12hNI0.986430.95
Time course 36hI-36hNI1.061210.58
Time course 60hI-60hNI0.526990.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.13890.748
transgenic ySAMdc/azygous control (breaker)5.429540.162
transgenic ySAMdc/azygous control (red)2.029710.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.601910.11

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.786720.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)4.779510.096
Manapal/WT (break)8.930530.183
Manapal/WT (red)11.48310.137