Expression of 1-1-7.4.2.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075730.863
27DAP/17DAP1.198560.801
39DAP/27DAP0.859140.487
41DAP/39DAP1.303310.403
42DAP/41DAP0.995771
43DAP/42DAP1.053881
47DAP/43DAP0.990130.84
52DAP/47DAP0.873920.646
57DAP/52DAP1.018150.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.960260.293
17DAP/reference1.07350.306
27DAP/reference0.944330.339
39DAP/reference1.010220.92
41DAP/reference1.062520.265
42DAP/reference0.955480.169
43DAP/reference1.110050.269
47DAP/reference0.970750.366
52DAP/reference0.835310.125
57DAP/reference0.982420.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.887170.376
27DAP/17DAP0.992510.919
39DAP/27DAP1.093910.519
41DAP/39DAP1.058431
42DAP/41DAP1.019210.939
43DAP/42DAP1.11880.212
47DAP/43DAP1.034920.827
52DAP/47DAP1.032650.907
57DAP/52DAP0.977040.763
57DAP/7DAP1.0181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796960.104
17DAP/reference0.774180.011
27DAP/reference0.738850.01
39DAP/reference0.803990.018
41DAP/reference0.789030.014
42DAP/reference0.704550.011
43DAP/reference0.709620.012
47DAP/reference0.854280.101
52DAP/reference0.714160.019
57DAP/reference0.745030.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.029930.823
17DAP/reference1.140080.203
27DAP/reference0.987910.598
39DAP/reference0.984750.554
41DAP/reference1.001950.718
42DAP/reference0.833820.024
43DAP/reference1.116170.176
47DAP/reference0.971040.232
52DAP/reference1.0330.667
57DAP/reference1.240660.083

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837660.087
17DAP/reference0.983870.709
27DAP/reference0.830130.048
39DAP/reference0.768470.028
41DAP/reference0.855730.055
42DAP/reference0.738350.016
43DAP/reference0.684020.018
47DAP/reference1.065110.372
52DAP/reference0.789430.177
57DAP/reference0.856420.083

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.170350.966
26DAP/20DAP0.905210.512
34DAP/26DAP1.140090.819
51DAP/34DAP0.949020.703
52DAP/51DAP0.90131
53DAP/52DAP1.087360.643
55DAP/53DAP1.039920.981
57DAP/55DAP1.134330.525
62DAP/57DAP1.146510.868
68DAP/62DAP0.943590.769
68DAP/14DAP0.730570.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.781920.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.032430.835
Immature Eggplant/Mature Eggplant0.86179
Ripe Pepper/Ripe Tomato2.17882
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.951890.944
1-1-2/M820.943651
12-2/M820.967820.955
12-4/M820.915771
1-3/M820.840920.441
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.083020.695
3-2/M820.864330.455
4-1-1/M820.967581
4-1/M820.862771
4-3-2/M820.840880.487
4-3/M820.8055
5-3/M820.926590.387
6-2/M820.99065
6-3/M820.8007
7-1/M821.073251
7-2/M821.043291
9-3-2/M820.797760.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.713490.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.860740.31
IL12-4/WTpooled1.030780.695
IL1-4/WTpooled1.18816
WT/WTpooled0.97211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.323650.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.974571
DC3000/delta hrp 6h1.05111
DC3000/delta hrp 12h1.310881
DC3000/delta hrp 24h1.234520.182

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.52091
DC3000 delta B/DC3000 delta AB0.76820.605

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.028281
Exp 36h1.003651
Exp 60h1.010291

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.05544
Var 0h1.03764
Var 12h I row2-row11.068070.208
Var 12h NI row2-row10.772180.494
Var 36h I row2-row10.766010.575
Var 36h NI row2-row11.739741
Var 60h I row2-row11.123590.448
Var 60h NI row2-row11.325880.904
Time course 0hI-0hNI1.043090.852
Time course 12hI-12hNI0.967950.831
Time course 36hI-36hNI0.862580.023
Time course 60hI-60hNI0.837260.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.944150.285
transgenic ySAMdc/azygous control (breaker)1.157780.162
transgenic ySAMdc/azygous control (red)1.103040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.026530.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.992811

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.450210.083
Manapal/WT (break)1.289580.381
Manapal/WT (red)1.341260.413