Expression of 1-1-7.4.2.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07573 | 0.863 |
27DAP/17DAP | 1.19856 | 0.801 |
39DAP/27DAP | 0.85914 | 0.487 |
41DAP/39DAP | 1.30331 | 0.403 |
42DAP/41DAP | 0.99577 | 1 |
43DAP/42DAP | 1.05388 | 1 |
47DAP/43DAP | 0.99013 | 0.84 |
52DAP/47DAP | 0.87392 | 0.646 |
57DAP/52DAP | 1.01815 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96026 | 0.293 |
17DAP/reference | 1.0735 | 0.306 |
27DAP/reference | 0.94433 | 0.339 |
39DAP/reference | 1.01022 | 0.92 |
41DAP/reference | 1.06252 | 0.265 |
42DAP/reference | 0.95548 | 0.169 |
43DAP/reference | 1.11005 | 0.269 |
47DAP/reference | 0.97075 | 0.366 |
52DAP/reference | 0.83531 | 0.125 |
57DAP/reference | 0.98242 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88717 | 0.376 |
27DAP/17DAP | 0.99251 | 0.919 |
39DAP/27DAP | 1.09391 | 0.519 |
41DAP/39DAP | 1.05843 | 1 |
42DAP/41DAP | 1.01921 | 0.939 |
43DAP/42DAP | 1.1188 | 0.212 |
47DAP/43DAP | 1.03492 | 0.827 |
52DAP/47DAP | 1.03265 | 0.907 |
57DAP/52DAP | 0.97704 | 0.763 |
57DAP/7DAP | 1.018 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79696 | 0.104 |
17DAP/reference | 0.77418 | 0.011 |
27DAP/reference | 0.73885 | 0.01 |
39DAP/reference | 0.80399 | 0.018 |
41DAP/reference | 0.78903 | 0.014 |
42DAP/reference | 0.70455 | 0.011 |
43DAP/reference | 0.70962 | 0.012 |
47DAP/reference | 0.85428 | 0.101 |
52DAP/reference | 0.71416 | 0.019 |
57DAP/reference | 0.74503 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02993 | 0.823 |
17DAP/reference | 1.14008 | 0.203 |
27DAP/reference | 0.98791 | 0.598 |
39DAP/reference | 0.98475 | 0.554 |
41DAP/reference | 1.00195 | 0.718 |
42DAP/reference | 0.83382 | 0.024 |
43DAP/reference | 1.11617 | 0.176 |
47DAP/reference | 0.97104 | 0.232 |
52DAP/reference | 1.033 | 0.667 |
57DAP/reference | 1.24066 | 0.083 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83766 | 0.087 |
17DAP/reference | 0.98387 | 0.709 |
27DAP/reference | 0.83013 | 0.048 |
39DAP/reference | 0.76847 | 0.028 |
41DAP/reference | 0.85573 | 0.055 |
42DAP/reference | 0.73835 | 0.016 |
43DAP/reference | 0.68402 | 0.018 |
47DAP/reference | 1.06511 | 0.372 |
52DAP/reference | 0.78943 | 0.177 |
57DAP/reference | 0.85642 | 0.083 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17035 | 0.966 |
26DAP/20DAP | 0.90521 | 0.512 |
34DAP/26DAP | 1.14009 | 0.819 |
51DAP/34DAP | 0.94902 | 0.703 |
52DAP/51DAP | 0.9013 | 1 |
53DAP/52DAP | 1.08736 | 0.643 |
55DAP/53DAP | 1.03992 | 0.981 |
57DAP/55DAP | 1.13433 | 0.525 |
62DAP/57DAP | 1.14651 | 0.868 |
68DAP/62DAP | 0.94359 | 0.769 |
68DAP/14DAP | 0.73057 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78192 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.03243 | 0.835 |
Immature Eggplant/Mature Eggplant | 0.86179 | |
Ripe Pepper/Ripe Tomato | 2.17882 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95189 | 0.944 |
1-1-2/M82 | 0.94365 | 1 |
12-2/M82 | 0.96782 | 0.955 |
12-4/M82 | 0.91577 | 1 |
1-3/M82 | 0.84092 | 0.441 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08302 | 0.695 |
3-2/M82 | 0.86433 | 0.455 |
4-1-1/M82 | 0.96758 | 1 |
4-1/M82 | 0.86277 | 1 |
4-3-2/M82 | 0.84088 | 0.487 |
4-3/M82 | 0.8055 | |
5-3/M82 | 0.92659 | 0.387 |
6-2/M82 | 0.99065 | |
6-3/M82 | 0.8007 | |
7-1/M82 | 1.07325 | 1 |
7-2/M82 | 1.04329 | 1 |
9-3-2/M82 | 0.79776 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.71349 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.86074 | 0.31 |
IL12-4/WTpooled | 1.03078 | 0.695 |
IL1-4/WTpooled | 1.18816 | |
WT/WTpooled | 0.9721 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.32365 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97457 | 1 |
DC3000/delta hrp 6h | 1.0511 | 1 |
DC3000/delta hrp 12h | 1.31088 | 1 |
DC3000/delta hrp 24h | 1.23452 | 0.182 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.52091 | |
DC3000 delta B/DC3000 delta AB | 0.7682 | 0.605 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02828 | 1 |
Exp 36h | 1.00365 | 1 |
Exp 60h | 1.01029 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05544 | |
Var 0h | 1.03764 | |
Var 12h I row2-row1 | 1.06807 | 0.208 |
Var 12h NI row2-row1 | 0.77218 | 0.494 |
Var 36h I row2-row1 | 0.76601 | 0.575 |
Var 36h NI row2-row1 | 1.73974 | 1 |
Var 60h I row2-row1 | 1.12359 | 0.448 |
Var 60h NI row2-row1 | 1.32588 | 0.904 |
Time course 0hI-0hNI | 1.04309 | 0.852 |
Time course 12hI-12hNI | 0.96795 | 0.831 |
Time course 36hI-36hNI | 0.86258 | 0.023 |
Time course 60hI-60hNI | 0.83726 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94415 | 0.285 |
transgenic ySAMdc/azygous control (breaker) | 1.15778 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.10304 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02653 | 0.261 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99281 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.45021 | 0.083 |
Manapal/WT (break) | 1.28958 | 0.381 |
Manapal/WT (red) | 1.34126 | 0.413 |
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