Expression of 1-1-7.4.20.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990020.867
27DAP/17DAP1.194350.849
39DAP/27DAP1.025451
41DAP/39DAP1.170660.715
42DAP/41DAP0.974441
43DAP/42DAP1.02661
47DAP/43DAP0.971370.859
52DAP/47DAP1.081510.957
57DAP/52DAP1.098660.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.97510.476
17DAP/reference0.925330.278
27DAP/reference1.013290.909
39DAP/reference0.982390.704
41DAP/reference0.911490.201
42DAP/reference0.962010.115
43DAP/reference0.937110.316
47DAP/reference0.970440.242
52DAP/reference0.800390.064
57DAP/reference0.860130.034

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.996740.871
27DAP/17DAP1.014210.954
39DAP/27DAP0.987980.898
41DAP/39DAP1.036690.807
42DAP/41DAP0.981530.801
43DAP/42DAP1.023490.513
47DAP/43DAP0.998121
52DAP/47DAP0.961060.686
57DAP/52DAP1.032790.798
57DAP/7DAP0.947181

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.051280.491
17DAP/reference0.978010.253
27DAP/reference0.892680.019
39DAP/reference1.047030.222
41DAP/reference1.029130.655
42DAP/reference0.930570.01
43DAP/reference0.989860.608
47DAP/reference1.041941
52DAP/reference1.15510.352
57DAP/reference1.164320.147

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968050.518
17DAP/reference0.953310.116
27DAP/reference0.914910.257
39DAP/reference0.964460.404
41DAP/reference0.926020.237
42DAP/reference0.918480.03
43DAP/reference0.919750.181
47DAP/reference0.998080.749
52DAP/reference0.912060.009
57DAP/reference0.918630.18

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960520.214
17DAP/reference0.961270.389
27DAP/reference1.018550.805
39DAP/reference1.006620.836
41DAP/reference0.970120.264
42DAP/reference0.880620.059
43DAP/reference0.904450.092
47DAP/reference1.025050.934
52DAP/reference0.926110.368
57DAP/reference0.855040.118

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.993261
26DAP/20DAP1.097820.598
34DAP/26DAP0.971180.741
51DAP/34DAP1.007980.962
52DAP/51DAP0.99081
53DAP/52DAP1.020250.819
55DAP/53DAP0.997260.925
57DAP/55DAP1.044960.841
62DAP/57DAP0.967940.994
68DAP/62DAP1.029611
68DAP/14DAP1.352240.065

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.004951

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.141290.068
Mature Green Tomato/Ripe Tomato0.939830.569
Immature Eggplant/Mature Eggplant1.039070.507
Ripe Pepper/Ripe Tomato0.957051
Mature Eggplant/Ripe Tomato1.182441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.995131
1-1-2/M820.899861
12-2/M820.96850.955
12-4/M820.916551
1-3/M820.978041
2-1-1/M821.013130.422
2-1/M821.040081
2-6/M820.983161
3-2/M820.996981
4-1-1/M820.840670.847
4-1/M821.101671
4-3-2/M820.851671
4-3/M820.950231
5-3/M820.998161
6-2/M820.953241
6-3/M821.026751
7-1/M820.962490.476
7-2/M821.016941
9-3-2/M820.95179

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.412610.277
IL2-6/WTpooled0.838950.383
IL7-5/WTpooled0.978641
IL7-3/WTpooled1.302571
IL12-4/WTpooled1.071430.546
IL1-4/WTpooled1.101291
WT/WTpooled0.910431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.030061

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.116330.75
DC3000/delta hrp 6h0.695490.95
DC3000/delta hrp 12h0.964921
DC3000/delta hrp 24h1.023960.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.144580.081
DC3000 delta B/DC3000 delta AB1.09090.335

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.040881
Exp 36h1.275260.693
Exp 60h1.28030.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.99581
Var 0hN/AN/A
Var 12h I row2-row11.238570.283
Var 12h NI row2-row11.029231
Var 36h I row2-row11.064051
Var 36h NI row2-row10.832350.478
Var 60h I row2-row10.955450.306
Var 60h NI row2-row11.068811
Time course 0hI-0hNI0.989150.994
Time course 12hI-12hNI1.019220.824
Time course 36hI-36hNI1.03770.355
Time course 60hI-60hNI1.73120.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.099010.286
transgenic ySAMdc/azygous control (breaker)0.663710.173
transgenic ySAMdc/azygous control (red)1.075470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.003650.811

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.686320.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.758961
Manapal/WT (break)1.053321
Manapal/WT (red)0.896920.424