Expression of 1-1-7.4.20.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.13610.096
27DAP/17DAP0.875950.708
39DAP/27DAP1.240590.677
41DAP/39DAP0.925370.678
42DAP/41DAP1.003591
43DAP/42DAP0.996490.937
47DAP/43DAP1.479810.235
52DAP/47DAP1.080220.98
57DAP/52DAP0.981070.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.950120.422
17DAP/reference0.947740.26
27DAP/reference0.912820.028
39DAP/reference0.952650.467
41DAP/reference0.849860.114
42DAP/reference0.976910.305
43DAP/reference0.965080.464
47DAP/reference1.032260.318
52DAP/reference1.205950.079
57DAP/reference1.159850.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.053991
27DAP/17DAP1.009981
39DAP/27DAP1.191260.28
41DAP/39DAP0.935270.804
42DAP/41DAP1.141470.075
43DAP/42DAP1.020650.478
47DAP/43DAP0.857560.027
52DAP/47DAP1.006031
57DAP/52DAP0.715980.196
57DAP/7DAP0.862910.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.19950.079
17DAP/reference0.798730.044
27DAP/reference1.184810.06
39DAP/reference1.586520.007
41DAP/reference0.978940.512
42DAP/reference2.384140.534
43DAP/reference0.700410.017
47DAP/reference1.316890.158
52DAP/reference1.069330.941
57DAP/reference0.686030.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.8750.058
17DAP/reference0.856120.014
27DAP/reference0.997820.711
39DAP/reference1.101830.489
41DAP/reference0.98570.505
42DAP/reference0.977650.433
43DAP/reference0.866950.027
47DAP/reference0.91190.094
52DAP/reference0.988150.537
57DAP/reference0.879040.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04590.602
17DAP/reference0.962250.579
27DAP/reference0.777460.033
39DAP/reference0.874710.063
41DAP/reference1.000950.826
42DAP/reference1.290250.294
43DAP/reference0.921230.348
47DAP/reference1.007841
52DAP/reference1.147610.384
57DAP/reference1.333970.171

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.9781
26DAP/20DAP1.016021
34DAP/26DAP1.094741
51DAP/34DAP1.094420.84
52DAP/51DAP1.266960.579
53DAP/52DAP1.109710.688
55DAP/53DAP0.897720.046
57DAP/55DAP0.94460.703
62DAP/57DAP1.188950.515
68DAP/62DAP0.984030.885
68DAP/14DAP1.229140.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.237970.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.058160.058
Mature Green Tomato/Ripe Tomato1.036731
Immature Eggplant/Mature Eggplant1.740750.05
Ripe Pepper/Ripe Tomato0.227870.224
Mature Eggplant/Ripe Tomato0.298380.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.072410.536
1-1-2/M821.110491
12-2/M820.821790.955
12-4/M821.307241
1-3/M820.98834
2-1-1/M820.801560.565
2-1/M820.755680.74
2-6/M821.079011
3-2/M820.948861
4-1-1/M820.919911
4-1/M821.641731
4-3-2/M821.105211
4-3/M820.92521
5-3/M821.190411
6-2/M820.800210.497
6-3/M821.001511
7-1/M821.024471
7-2/M820.872250.578
9-3-2/M821.45592

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.78060.243
IL2-6/WTpooled0.810531
IL7-5/WTpooled1.53939
IL7-3/WTpooled1.188051
IL12-4/WTpooled1.156880.891
IL1-4/WTpooled0.770120.562
WT/WTpooled1.079680.999

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.199841

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.086810.846
DC3000/delta hrp 6h1.144521
DC3000/delta hrp 12h1.008961
DC3000/delta hrp 24h0.655240.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.98986
DC3000 delta B/DC3000 delta AB1.376760.234

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.417131
Exp 36h0.980170.943
Exp 60h1.060491

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.883161
Var 0hN/AN/A
Var 12h I row2-row11.246670.199
Var 12h NI row2-row11.107230.649
Var 36h I row2-row11.137241
Var 36h NI row2-row11.100921
Var 60h I row2-row10.686910.285
Var 60h NI row2-row10.918150.756
Time course 0hI-0hNI1.04380.867
Time course 12hI-12hNI2.03690.005
Time course 36hI-36hNI1.614120.005
Time course 60hI-60hNI1.974490.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.116650.286
transgenic ySAMdc/azygous control (breaker)0.936090.49
transgenic ySAMdc/azygous control (red)0.687531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.282040.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.217121

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.776260.307
Manapal/WT (break)1.427240.381
Manapal/WT (red)1.138430.413