Expression of 1-1-7.4.20.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 3.1361 | 0.096 |
27DAP/17DAP | 0.87595 | 0.708 |
39DAP/27DAP | 1.24059 | 0.677 |
41DAP/39DAP | 0.92537 | 0.678 |
42DAP/41DAP | 1.00359 | 1 |
43DAP/42DAP | 0.99649 | 0.937 |
47DAP/43DAP | 1.47981 | 0.235 |
52DAP/47DAP | 1.08022 | 0.98 |
57DAP/52DAP | 0.98107 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95012 | 0.422 |
17DAP/reference | 0.94774 | 0.26 |
27DAP/reference | 0.91282 | 0.028 |
39DAP/reference | 0.95265 | 0.467 |
41DAP/reference | 0.84986 | 0.114 |
42DAP/reference | 0.97691 | 0.305 |
43DAP/reference | 0.96508 | 0.464 |
47DAP/reference | 1.03226 | 0.318 |
52DAP/reference | 1.20595 | 0.079 |
57DAP/reference | 1.15985 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05399 | 1 |
27DAP/17DAP | 1.00998 | 1 |
39DAP/27DAP | 1.19126 | 0.28 |
41DAP/39DAP | 0.93527 | 0.804 |
42DAP/41DAP | 1.14147 | 0.075 |
43DAP/42DAP | 1.02065 | 0.478 |
47DAP/43DAP | 0.85756 | 0.027 |
52DAP/47DAP | 1.00603 | 1 |
57DAP/52DAP | 0.71598 | 0.196 |
57DAP/7DAP | 0.86291 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1995 | 0.079 |
17DAP/reference | 0.79873 | 0.044 |
27DAP/reference | 1.18481 | 0.06 |
39DAP/reference | 1.58652 | 0.007 |
41DAP/reference | 0.97894 | 0.512 |
42DAP/reference | 2.38414 | 0.534 |
43DAP/reference | 0.70041 | 0.017 |
47DAP/reference | 1.31689 | 0.158 |
52DAP/reference | 1.06933 | 0.941 |
57DAP/reference | 0.68603 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.875 | 0.058 |
17DAP/reference | 0.85612 | 0.014 |
27DAP/reference | 0.99782 | 0.711 |
39DAP/reference | 1.10183 | 0.489 |
41DAP/reference | 0.9857 | 0.505 |
42DAP/reference | 0.97765 | 0.433 |
43DAP/reference | 0.86695 | 0.027 |
47DAP/reference | 0.9119 | 0.094 |
52DAP/reference | 0.98815 | 0.537 |
57DAP/reference | 0.87904 | 0.058 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0459 | 0.602 |
17DAP/reference | 0.96225 | 0.579 |
27DAP/reference | 0.77746 | 0.033 |
39DAP/reference | 0.87471 | 0.063 |
41DAP/reference | 1.00095 | 0.826 |
42DAP/reference | 1.29025 | 0.294 |
43DAP/reference | 0.92123 | 0.348 |
47DAP/reference | 1.00784 | 1 |
52DAP/reference | 1.14761 | 0.384 |
57DAP/reference | 1.33397 | 0.171 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.978 | 1 |
26DAP/20DAP | 1.01602 | 1 |
34DAP/26DAP | 1.09474 | 1 |
51DAP/34DAP | 1.09442 | 0.84 |
52DAP/51DAP | 1.26696 | 0.579 |
53DAP/52DAP | 1.10971 | 0.688 |
55DAP/53DAP | 0.89772 | 0.046 |
57DAP/55DAP | 0.9446 | 0.703 |
62DAP/57DAP | 1.18895 | 0.515 |
68DAP/62DAP | 0.98403 | 0.885 |
68DAP/14DAP | 1.22914 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.23797 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.05816 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.03673 | 1 |
Immature Eggplant/Mature Eggplant | 1.74075 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.22787 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.29838 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07241 | 0.536 |
1-1-2/M82 | 1.11049 | 1 |
12-2/M82 | 0.82179 | 0.955 |
12-4/M82 | 1.30724 | 1 |
1-3/M82 | 0.98834 | |
2-1-1/M82 | 0.80156 | 0.565 |
2-1/M82 | 0.75568 | 0.74 |
2-6/M82 | 1.07901 | 1 |
3-2/M82 | 0.94886 | 1 |
4-1-1/M82 | 0.91991 | 1 |
4-1/M82 | 1.64173 | 1 |
4-3-2/M82 | 1.10521 | 1 |
4-3/M82 | 0.9252 | 1 |
5-3/M82 | 1.19041 | 1 |
6-2/M82 | 0.80021 | 0.497 |
6-3/M82 | 1.00151 | 1 |
7-1/M82 | 1.02447 | 1 |
7-2/M82 | 0.87225 | 0.578 |
9-3-2/M82 | 1.45592 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.7806 | 0.243 |
IL2-6/WTpooled | 0.81053 | 1 |
IL7-5/WTpooled | 1.53939 | |
IL7-3/WTpooled | 1.18805 | 1 |
IL12-4/WTpooled | 1.15688 | 0.891 |
IL1-4/WTpooled | 0.77012 | 0.562 |
WT/WTpooled | 1.07968 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19984 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08681 | 0.846 |
DC3000/delta hrp 6h | 1.14452 | 1 |
DC3000/delta hrp 12h | 1.00896 | 1 |
DC3000/delta hrp 24h | 0.65524 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.98986 | |
DC3000 delta B/DC3000 delta AB | 1.37676 | 0.234 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.41713 | 1 |
Exp 36h | 0.98017 | 0.943 |
Exp 60h | 1.06049 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.88316 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.24667 | 0.199 |
Var 12h NI row2-row1 | 1.10723 | 0.649 |
Var 36h I row2-row1 | 1.13724 | 1 |
Var 36h NI row2-row1 | 1.10092 | 1 |
Var 60h I row2-row1 | 0.68691 | 0.285 |
Var 60h NI row2-row1 | 0.91815 | 0.756 |
Time course 0hI-0hNI | 1.0438 | 0.867 |
Time course 12hI-12hNI | 2.0369 | 0.005 |
Time course 36hI-36hNI | 1.61412 | 0.005 |
Time course 60hI-60hNI | 1.97449 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11665 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.93609 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.68753 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.28204 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.21712 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.77626 | 0.307 |
Manapal/WT (break) | 1.42724 | 0.381 |
Manapal/WT (red) | 1.13843 | 0.413 |
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