Expression of 1-1-7.4.20.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.48289 | 0.082 |
27DAP/17DAP | 0.70874 | 0.184 |
39DAP/27DAP | 1.38995 | 0.387 |
41DAP/39DAP | 1.55164 | 0.3 |
42DAP/41DAP | 1.31062 | 0.755 |
43DAP/42DAP | 0.91828 | 0.854 |
47DAP/43DAP | 1.12112 | 0.502 |
52DAP/47DAP | 1.21381 | 0.937 |
57DAP/52DAP | 0.95079 | 0.952 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86707 | 0.062 |
17DAP/reference | 0.85268 | 0.05 |
27DAP/reference | 0.9171 | 0.137 |
39DAP/reference | 0.93508 | |
41DAP/reference | 0.91549 | 0.434 |
42DAP/reference | 0.85395 | 0.103 |
43DAP/reference | 1.06898 | 0.287 |
47DAP/reference | 1.31911 | 0.215 |
52DAP/reference | 0.94037 | 0.237 |
57DAP/reference | 0.91322 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.66734 | 0.07 |
27DAP/17DAP | 1.90997 | 0.527 |
39DAP/27DAP | 1.66077 | 0.623 |
41DAP/39DAP | 1.23931 | |
42DAP/41DAP | 1.73435 | 0.022 |
43DAP/42DAP | 0.61201 | |
47DAP/43DAP | 1.69186 | |
52DAP/47DAP | 1.53796 | |
57DAP/52DAP | 1.28484 | |
57DAP/7DAP | 1.81557 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82165 | 0.062 |
17DAP/reference | 0.82114 | 0.011 |
27DAP/reference | 0.80849 | 0.01 |
39DAP/reference | 0.88248 | 0.021 |
41DAP/reference | 0.80163 | 0.01 |
42DAP/reference | 0.76359 | 0.01 |
43DAP/reference | 0.72476 | 0.011 |
47DAP/reference | 0.85918 | 0.101 |
52DAP/reference | 0.71637 | 0.061 |
57DAP/reference | 0.72091 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96218 | 0.607 |
17DAP/reference | 0.8183 | 0.063 |
27DAP/reference | 0.83283 | 0.352 |
39DAP/reference | 0.93881 | 0.322 |
41DAP/reference | 0.68761 | 0.005 |
42DAP/reference | 1.00931 | 1 |
43DAP/reference | 1.0176 | 1 |
47DAP/reference | 0.69725 | |
52DAP/reference | 0.89022 | 0.034 |
57DAP/reference | 1.105 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77634 | 0.025 |
17DAP/reference | 0.92111 | 0.249 |
27DAP/reference | 0.82525 | 0.038 |
39DAP/reference | 0.85628 | 0.033 |
41DAP/reference | 0.87093 | 0.032 |
42DAP/reference | 0.89216 | 0.028 |
43DAP/reference | 0.84733 | 0.032 |
47DAP/reference | 0.89551 | 0.076 |
52DAP/reference | 1.07473 | 0.917 |
57DAP/reference | 0.79464 | 0.059 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00536 | 1 |
26DAP/20DAP | 1.18759 | |
34DAP/26DAP | 0.81632 | 0.879 |
51DAP/34DAP | 0.9351 | |
52DAP/51DAP | 1.08809 | 0.349 |
53DAP/52DAP | 0.61049 | 0.055 |
55DAP/53DAP | 1.16025 | 1 |
57DAP/55DAP | 0.97381 | 0.875 |
62DAP/57DAP | 1.50307 | 0.303 |
68DAP/62DAP | 1.45507 | 0.747 |
68DAP/14DAP | 0.95573 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.86812 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.44155 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.94575 | 0.522 |
Immature Eggplant/Mature Eggplant | 2.49147 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.23382 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.3407 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06656 | 0.877 |
1-1-2/M82 | 1.11507 | 0.977 |
12-2/M82 | 0.99855 | 1 |
12-4/M82 | 1.21272 | 1 |
1-3/M82 | 1.07681 | 1 |
2-1-1/M82 | 0.61307 | 0.92 |
2-1/M82 | 0.84727 | 0.519 |
2-6/M82 | 1.0586 | 0.695 |
3-2/M82 | 1.00753 | 1 |
4-1-1/M82 | 0.85739 | |
4-1/M82 | 1.92748 | 0.512 |
4-3-2/M82 | 1.04989 | |
4-3/M82 | 0.94094 | 1 |
5-3/M82 | 1.04262 | 1 |
6-2/M82 | 0.65702 | 0.481 |
6-3/M82 | 1.01419 | 1 |
7-1/M82 | 0.92746 | |
7-2/M82 | 0.96713 | 1 |
9-3-2/M82 | 1.16891 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.24183 | 0.277 |
IL2-6/WTpooled | 1.07629 | 1 |
IL7-5/WTpooled | 1.48819 | 0.75 |
IL7-3/WTpooled | 1.39621 | 1 |
IL12-4/WTpooled | 1.22927 | 0.695 |
IL1-4/WTpooled | 1.08159 | 1 |
WT/WTpooled | 0.91916 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94006 | 1 |
DC3000/delta hrp 6h | 1.11108 | 1 |
DC3000/delta hrp 12h | 1.03865 | 1 |
DC3000/delta hrp 24h | 0.96547 | 0.91 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08655 | 1 |
Exp 36h | 1.73638 | 0.693 |
Exp 60h | 1.50213 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 4.23003 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03128 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.20229 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.57906 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.16589 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.84039 | 1 |
Manapal/WT (break) | 1.08959 | 1 |
Manapal/WT (red) | 0.67518 | 0.181 |
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