Expression of 1-1-7.4.20.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.482890.082
27DAP/17DAP0.708740.184
39DAP/27DAP1.389950.387
41DAP/39DAP1.551640.3
42DAP/41DAP1.310620.755
43DAP/42DAP0.918280.854
47DAP/43DAP1.121120.502
52DAP/47DAP1.213810.937
57DAP/52DAP0.950790.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.867070.062
17DAP/reference0.852680.05
27DAP/reference0.91710.137
39DAP/reference0.93508
41DAP/reference0.915490.434
42DAP/reference0.853950.103
43DAP/reference1.068980.287
47DAP/reference1.319110.215
52DAP/reference0.940370.237
57DAP/reference0.913220.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.667340.07
27DAP/17DAP1.909970.527
39DAP/27DAP1.660770.623
41DAP/39DAP1.23931
42DAP/41DAP1.734350.022
43DAP/42DAP0.61201
47DAP/43DAP1.69186
52DAP/47DAP1.53796
57DAP/52DAP1.28484
57DAP/7DAP1.81557

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.821650.062
17DAP/reference0.821140.011
27DAP/reference0.808490.01
39DAP/reference0.882480.021
41DAP/reference0.801630.01
42DAP/reference0.763590.01
43DAP/reference0.724760.011
47DAP/reference0.859180.101
52DAP/reference0.716370.061
57DAP/reference0.720910.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.962180.607
17DAP/reference0.81830.063
27DAP/reference0.832830.352
39DAP/reference0.938810.322
41DAP/reference0.687610.005
42DAP/reference1.009311
43DAP/reference1.01761
47DAP/reference0.69725
52DAP/reference0.890220.034
57DAP/reference1.1050.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.776340.025
17DAP/reference0.921110.249
27DAP/reference0.825250.038
39DAP/reference0.856280.033
41DAP/reference0.870930.032
42DAP/reference0.892160.028
43DAP/reference0.847330.032
47DAP/reference0.895510.076
52DAP/reference1.074730.917
57DAP/reference0.794640.059

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.005361
26DAP/20DAP1.18759
34DAP/26DAP0.816320.879
51DAP/34DAP0.9351
52DAP/51DAP1.088090.349
53DAP/52DAP0.610490.055
55DAP/53DAP1.160251
57DAP/55DAP0.973810.875
62DAP/57DAP1.503070.303
68DAP/62DAP1.455070.747
68DAP/14DAP0.955731

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.868120.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.441550.058
Mature Green Tomato/Ripe Tomato0.945750.522
Immature Eggplant/Mature Eggplant2.491470.05
Ripe Pepper/Ripe Tomato0.233820.224
Mature Eggplant/Ripe Tomato0.34070.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.066560.877
1-1-2/M821.115070.977
12-2/M820.998551
12-4/M821.212721
1-3/M821.076811
2-1-1/M820.613070.92
2-1/M820.847270.519
2-6/M821.05860.695
3-2/M821.007531
4-1-1/M820.85739
4-1/M821.927480.512
4-3-2/M821.04989
4-3/M820.940941
5-3/M821.042621
6-2/M820.657020.481
6-3/M821.014191
7-1/M820.92746
7-2/M820.967131
9-3-2/M821.16891

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.241830.277
IL2-6/WTpooled1.076291
IL7-5/WTpooled1.488190.75
IL7-3/WTpooled1.396211
IL12-4/WTpooled1.229270.695
IL1-4/WTpooled1.081591
WT/WTpooled0.919161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.940061
DC3000/delta hrp 6h1.111081
DC3000/delta hrp 12h1.038651
DC3000/delta hrp 24h0.965470.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.086551
Exp 36h1.736380.693
Exp 60h1.502130.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row14.23003
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.031280.612
transgenic ySAMdc/azygous control (breaker)1.202290.248
transgenic ySAMdc/azygous control (red)0.579061

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.165890.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.840391
Manapal/WT (break)1.089591
Manapal/WT (red)0.675180.181