Expression of 1-1-7.4.3.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.085420.893
27DAP/17DAP2.541310.331
39DAP/27DAP0.798910.241
41DAP/39DAP1.165810.696
42DAP/41DAP1.219250.929
43DAP/42DAP1.468291
47DAP/43DAP1.293660.455
52DAP/47DAP1.002020.854
57DAP/52DAP1.219631

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.385210.662
17DAP/reference1.379330.013
27DAP/reference1.163130.599
39DAP/reference1.458870.038
41DAP/reference1.905410.014
42DAP/reference1.099511
43DAP/reference1.25278
47DAP/reference0.66773
52DAP/reference1.006990.73
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.68795
27DAP/17DAP1.190130.447
39DAP/27DAP2.305080.436
41DAP/39DAP1.660320.853
42DAP/41DAP1.105391
43DAP/42DAP0.68434
47DAP/43DAP0.666440.743
52DAP/47DAP1.122910.982
57DAP/52DAPN/AN/A
57DAP/7DAP1.11205

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84550.104
17DAP/reference0.839480.025
27DAP/reference1.029630.804
39DAP/reference0.942580.264
41DAP/reference0.797450.047
42DAP/reference0.767630.017
43DAP/reference0.866650.082
47DAP/reference0.792470.293
52DAP/reference0.868330.066
57DAP/reference0.746430.013

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.989740.884
17DAP/reference0.940610.399
27DAP/reference1.16590.212
39DAP/reference1.232620.705
41DAP/reference0.911410.373
42DAP/reference1.483250.031
43DAP/reference1.033681
47DAP/reference1.197910.045
52DAP/reference1.417760.988
57DAP/reference1.372820.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.847690.127
17DAP/reference0.858350.205
27DAP/reference0.792620.048
39DAP/reference0.679370.029
41DAP/reference0.859270.037
42DAP/reference0.758020.134
43DAP/reference0.905830.305
47DAP/reference0.477630.018
52DAP/reference0.915310.493
57DAP/reference0.699580.022

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.253540.966
26DAP/20DAPN/AN/A
34DAP/26DAP0.947250.954
51DAP/34DAP1.359790.164
52DAP/51DAPN/AN/A
53DAP/52DAP0.794330.535
55DAP/53DAP1.285640.764
57DAP/55DAP1.3154
62DAP/57DAP1.310171
68DAP/62DAPN/AN/A
68DAP/14DAP0.65673

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.62486

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.04973
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971810.961
1-1-2/M821.003111
12-2/M820.980041
12-4/M820.995511
1-3/M821.262520.248
2-1-1/M821.007111
2-1/M820.692970.519
2-6/M820.965661
3-2/M821.00776
4-1-1/M820.988641
4-1/M820.99269
4-3-2/M821.09907
4-3/M820.96931
5-3/M820.950741
6-2/M821.008471
6-3/M820.908921
7-1/M821.067520.992
7-2/M820.915060.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.047581
IL7-5/WTpooled0.878891
IL7-3/WTpooled0.974171
IL12-4/WTpooled0.759840.554
IL1-4/WTpooled1.189431
WT/WTpooled0.853351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027990.846
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.305041
DC3000/delta hrp 24h0.836130.148

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control8.751231

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.68440.229