Expression of 1-1-7.4.3.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00922 | 0.997 |
27DAP/17DAP | 1.07215 | 0.881 |
39DAP/27DAP | 1.04003 | 1 |
41DAP/39DAP | 1.15411 | 0.914 |
42DAP/41DAP | 0.84807 | 1 |
43DAP/42DAP | 0.93892 | 0.877 |
47DAP/43DAP | 1.0062 | 0.953 |
52DAP/47DAP | 1.35379 | 0.493 |
57DAP/52DAP | 0.99118 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09665 | 0.252 |
17DAP/reference | 1.04519 | 0.258 |
27DAP/reference | 0.97475 | 0.349 |
39DAP/reference | 0.93763 | 0.128 |
41DAP/reference | 1.0235 | 0.714 |
42DAP/reference | 1.10708 | 0.023 |
43DAP/reference | 1.01609 | 0.812 |
47DAP/reference | 1.02589 | 0.612 |
52DAP/reference | 1.2115 | 0.035 |
57DAP/reference | 1.05589 | 0.496 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.23311 | 0.473 |
27DAP/17DAP | 0.94545 | 0.259 |
39DAP/27DAP | 0.94042 | 0.419 |
41DAP/39DAP | 1.06026 | 0.773 |
42DAP/41DAP | 1.01543 | 0.886 |
43DAP/42DAP | 0.95117 | 0.447 |
47DAP/43DAP | 0.94159 | 0.559 |
52DAP/47DAP | 1.00952 | 0.973 |
57DAP/52DAP | 0.98291 | 0.742 |
57DAP/7DAP | 0.95277 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04543 | 0.613 |
17DAP/reference | 0.99416 | 0.518 |
27DAP/reference | 0.93651 | 0.088 |
39DAP/reference | 0.96083 | 0.264 |
41DAP/reference | 1.05045 | 0.177 |
42DAP/reference | 1.10233 | 0.233 |
43DAP/reference | 1.00229 | 0.802 |
47DAP/reference | 0.93365 | 0.293 |
52DAP/reference | 1.05634 | 0.526 |
57DAP/reference | 0.95885 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04587 | 0.367 |
17DAP/reference | 1.12396 | 0.147 |
27DAP/reference | 1.19838 | 0.083 |
39DAP/reference | 1.14612 | 0.175 |
41DAP/reference | 1.29058 | 0.037 |
42DAP/reference | 1.19382 | 0.148 |
43DAP/reference | 1.09977 | 0.745 |
47DAP/reference | 1.06693 | 0.218 |
52DAP/reference | 1.11841 | 0.046 |
57DAP/reference | 1.09222 | 0.508 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01059 | 0.846 |
17DAP/reference | 1.05679 | 0.551 |
27DAP/reference | 1.03068 | 0.621 |
39DAP/reference | 0.98925 | 0.393 |
41DAP/reference | 1.06637 | 0.257 |
42DAP/reference | 1.03324 | 0.802 |
43DAP/reference | 1.13493 | 0.505 |
47DAP/reference | 1.00394 | 1 |
52DAP/reference | 0.89964 | 0.172 |
57DAP/reference | 1.31849 | 0.032 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07231 | 0.966 |
26DAP/20DAP | 0.97523 | 1 |
34DAP/26DAP | 0.99285 | 1 |
51DAP/34DAP | 0.95699 | 0.674 |
52DAP/51DAP | 0.9682 | 1 |
53DAP/52DAP | 0.94508 | 0.684 |
55DAP/53DAP | 1.0197 | 1 |
57DAP/55DAP | 1.08251 | 0.854 |
62DAP/57DAP | 1.24452 | 0.003 |
68DAP/62DAP | 0.91807 | 0.747 |
68DAP/14DAP | 1.12465 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02187 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.47407 | 0.113 |
Mature Green Tomato/Ripe Tomato | 1.04815 | 1 |
Immature Eggplant/Mature Eggplant | 2.1132 | 0.288 |
Ripe Pepper/Ripe Tomato | 1.69739 | 1 |
Mature Eggplant/Ripe Tomato | 2.16488 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00472 | 1 |
1-1-2/M82 | 0.82634 | 1 |
12-2/M82 | 0.92949 | 0.955 |
12-4/M82 | 0.98922 | 1 |
1-3/M82 | 0.98244 | 1 |
2-1-1/M82 | 0.89347 | 0.92 |
2-1/M82 | 1.08089 | |
2-6/M82 | 0.98327 | 0.501 |
3-2/M82 | 1.00048 | 1 |
4-1-1/M82 | 0.99928 | 1 |
4-1/M82 | 0.95928 | 1 |
4-3-2/M82 | 0.87843 | 0.698 |
4-3/M82 | 0.92396 | 1 |
5-3/M82 | 0.99413 | 1 |
6-2/M82 | 1.0432 | 1 |
6-3/M82 | 0.92213 | 1 |
7-1/M82 | 1.06359 | 1 |
7-2/M82 | 0.89813 | 0.881 |
9-3-2/M82 | 0.85849 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.03254 | |
IL2-6/WTpooled | 1.04802 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.15797 | 1 |
IL12-4/WTpooled | 0.78872 | 0.581 |
IL1-4/WTpooled | 1.0438 | 0.426 |
WT/WTpooled | 0.99952 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96999 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01687 | 0.921 |
DC3000/delta hrp 6h | 1.87227 | 1 |
DC3000/delta hrp 12h | 1.1394 | 1 |
DC3000/delta hrp 24h | 1.01182 | 0.743 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12315 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.06084 | 0.484 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.91729 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.62051 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96486 | 1 |
Var 0h | 1.04541 | 1 |
Var 12h I row2-row1 | 1.21156 | 0.196 |
Var 12h NI row2-row1 | 1.17378 | 1 |
Var 36h I row2-row1 | 0.865 | 0.805 |
Var 36h NI row2-row1 | 0.84778 | 0.478 |
Var 60h I row2-row1 | 1.02213 | 1 |
Var 60h NI row2-row1 | 1.13748 | 0.904 |
Time course 0hI-0hNI | 0.98851 | 0.979 |
Time course 12hI-12hNI | 0.97259 | 0.745 |
Time course 36hI-36hNI | 0.99078 | 0.589 |
Time course 60hI-60hNI | 1.39334 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94515 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.8923 | 1 |
transgenic ySAMdc/azygous control (red) | 1.43385 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98196 | 0.5 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97839 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90442 | 1 |
Manapal/WT (break) | 0.99029 | 1 |
Manapal/WT (red) | 1.06792 | 0.413 |
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