Expression of 1-1-7.4.3.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009220.997
27DAP/17DAP1.072150.881
39DAP/27DAP1.040031
41DAP/39DAP1.154110.914
42DAP/41DAP0.848071
43DAP/42DAP0.938920.877
47DAP/43DAP1.00620.953
52DAP/47DAP1.353790.493
57DAP/52DAP0.991180.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.096650.252
17DAP/reference1.045190.258
27DAP/reference0.974750.349
39DAP/reference0.937630.128
41DAP/reference1.02350.714
42DAP/reference1.107080.023
43DAP/reference1.016090.812
47DAP/reference1.025890.612
52DAP/reference1.21150.035
57DAP/reference1.055890.496

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.233110.473
27DAP/17DAP0.945450.259
39DAP/27DAP0.940420.419
41DAP/39DAP1.060260.773
42DAP/41DAP1.015430.886
43DAP/42DAP0.951170.447
47DAP/43DAP0.941590.559
52DAP/47DAP1.009520.973
57DAP/52DAP0.982910.742
57DAP/7DAP0.952771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045430.613
17DAP/reference0.994160.518
27DAP/reference0.936510.088
39DAP/reference0.960830.264
41DAP/reference1.050450.177
42DAP/reference1.102330.233
43DAP/reference1.002290.802
47DAP/reference0.933650.293
52DAP/reference1.056340.526
57DAP/reference0.958850.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045870.367
17DAP/reference1.123960.147
27DAP/reference1.198380.083
39DAP/reference1.146120.175
41DAP/reference1.290580.037
42DAP/reference1.193820.148
43DAP/reference1.099770.745
47DAP/reference1.066930.218
52DAP/reference1.118410.046
57DAP/reference1.092220.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.010590.846
17DAP/reference1.056790.551
27DAP/reference1.030680.621
39DAP/reference0.989250.393
41DAP/reference1.066370.257
42DAP/reference1.033240.802
43DAP/reference1.134930.505
47DAP/reference1.003941
52DAP/reference0.899640.172
57DAP/reference1.318490.032

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072310.966
26DAP/20DAP0.975231
34DAP/26DAP0.992851
51DAP/34DAP0.956990.674
52DAP/51DAP0.96821
53DAP/52DAP0.945080.684
55DAP/53DAP1.01971
57DAP/55DAP1.082510.854
62DAP/57DAP1.244520.003
68DAP/62DAP0.918070.747
68DAP/14DAP1.124650.279

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.021870.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.474070.113
Mature Green Tomato/Ripe Tomato1.048151
Immature Eggplant/Mature Eggplant2.11320.288
Ripe Pepper/Ripe Tomato1.697391
Mature Eggplant/Ripe Tomato2.16488

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004721
1-1-2/M820.826341
12-2/M820.929490.955
12-4/M820.989221
1-3/M820.982441
2-1-1/M820.893470.92
2-1/M821.08089
2-6/M820.983270.501
3-2/M821.000481
4-1-1/M820.999281
4-1/M820.959281
4-3-2/M820.878430.698
4-3/M820.923961
5-3/M820.994131
6-2/M821.04321
6-3/M820.922131
7-1/M821.063591
7-2/M820.898130.881
9-3-2/M820.858490.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.03254
IL2-6/WTpooled1.04802
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.157971
IL12-4/WTpooled0.788720.581
IL1-4/WTpooled1.04380.426
WT/WTpooled0.999521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.969991

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016870.921
DC3000/delta hrp 6h1.872271
DC3000/delta hrp 12h1.13941
DC3000/delta hrp 24h1.011820.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.123150.29
DC3000 delta B/DC3000 delta AB1.060840.484

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.917291
Exp 36hN/AN/A
Exp 60h1.620510.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964861
Var 0h1.045411
Var 12h I row2-row11.211560.196
Var 12h NI row2-row11.173781
Var 36h I row2-row10.8650.805
Var 36h NI row2-row10.847780.478
Var 60h I row2-row11.022131
Var 60h NI row2-row11.137480.904
Time course 0hI-0hNI0.988510.979
Time course 12hI-12hNI0.972590.745
Time course 36hI-36hNI0.990780.589
Time course 60hI-60hNI1.393340.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.945150.428
transgenic ySAMdc/azygous control (breaker)0.89231
transgenic ySAMdc/azygous control (red)1.433850.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.981960.5

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.978390.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.904421
Manapal/WT (break)0.990291
Manapal/WT (red)1.067920.413