Expression of 1-1-7.4.4.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76267 | 0.303 |
27DAP/17DAP | 1.15731 | 1 |
39DAP/27DAP | 0.81765 | 0.544 |
41DAP/39DAP | 1.13744 | 0.844 |
42DAP/41DAP | 1.29613 | 0.825 |
43DAP/42DAP | 1.05799 | 1 |
47DAP/43DAP | 1.07294 | 0.689 |
52DAP/47DAP | 1.3166 | 0.521 |
57DAP/52DAP | 1.30733 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98273 | 0.589 |
17DAP/reference | 1.09998 | 0.051 |
27DAP/reference | 1.03987 | 0.539 |
39DAP/reference | 1.04835 | 0.169 |
41DAP/reference | 1.16145 | 0.022 |
42DAP/reference | 0.96144 | 0.072 |
43DAP/reference | 1.02411 | 0.758 |
47DAP/reference | 0.88151 | 0.007 |
52DAP/reference | 0.90121 | 0.143 |
57DAP/reference | 0.84845 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13813 | 0.372 |
27DAP/17DAP | 0.98838 | 0.943 |
39DAP/27DAP | 0.87193 | 0.338 |
41DAP/39DAP | 0.91443 | 0.747 |
42DAP/41DAP | 1.04084 | 0.984 |
43DAP/42DAP | 1.03764 | 0.746 |
47DAP/43DAP | 0.923 | 0.656 |
52DAP/47DAP | 1.10508 | 0.676 |
57DAP/52DAP | 1.297 | 0.259 |
57DAP/7DAP | 0.94673 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17224 | 0.144 |
17DAP/reference | 1.46584 | 0.007 |
27DAP/reference | 1.50694 | 0.007 |
39DAP/reference | 1.79107 | 0.007 |
41DAP/reference | 1.66798 | 0.015 |
42DAP/reference | 1.81467 | 0.007 |
43DAP/reference | 1.9334 | 0.008 |
47DAP/reference | 1.17516 | 0.48 |
52DAP/reference | 1.54613 | 0.01 |
57DAP/reference | 1.28486 | 0.016 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15792 | 0.156 |
17DAP/reference | 1.09486 | 0.348 |
27DAP/reference | 1.01879 | 1 |
39DAP/reference | 1.07053 | 0.556 |
41DAP/reference | 1.02272 | 1 |
42DAP/reference | 1.02561 | 0.934 |
43DAP/reference | 1.12478 | 0.401 |
47DAP/reference | 1.01542 | 0.89 |
52DAP/reference | 1.07455 | 0.498 |
57DAP/reference | 1.12401 | 0.64 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37381 | 0.021 |
17DAP/reference | 1.09473 | 0.551 |
27DAP/reference | 1.33295 | 0.034 |
39DAP/reference | 1.086 | 0.227 |
41DAP/reference | 1.30716 | 0.093 |
42DAP/reference | 1.13293 | 0.775 |
43DAP/reference | 1.10517 | 0.755 |
47DAP/reference | 0.93552 | 0.278 |
52DAP/reference | 1.33117 | 0.106 |
57DAP/reference | 0.74496 | 0.051 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0376 | 0.966 |
26DAP/20DAP | 1.05863 | 1 |
34DAP/26DAP | 1.14464 | 1 |
51DAP/34DAP | 0.6793 | 0.274 |
52DAP/51DAP | 1.62728 | 0.036 |
53DAP/52DAP | 0.84555 | 0.212 |
55DAP/53DAP | 1.13459 | 0.504 |
57DAP/55DAP | 0.85011 | 0.318 |
62DAP/57DAP | 1.14449 | 0.723 |
68DAP/62DAP | 0.96476 | 0.81 |
68DAP/14DAP | 0.64107 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6993 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.10691 | 0.478 |
Immature Eggplant/Mature Eggplant | 1.36379 | |
Ripe Pepper/Ripe Tomato | 0.57087 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.76782 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17947 | 0.742 |
1-1-2/M82 | 1.37117 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.10166 | |
1-3/M82 | 0.92248 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.89471 | |
3-2/M82 | 1.39553 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.31847 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.95265 | 1 |
7-2/M82 | 0.96822 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.94037 | 1 |
IL2-6/WTpooled | 0.80641 | 0.473 |
IL7-5/WTpooled | 1.46842 | 0.792 |
IL7-3/WTpooled | 0.90126 | 0.418 |
IL12-4/WTpooled | 1.09143 | 0.785 |
IL1-4/WTpooled | 0.9766 | 0.834 |
WT/WTpooled | 0.98743 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9394 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03813 | 0.921 |
DC3000/delta hrp 6h | 0.98466 | 0.95 |
DC3000/delta hrp 12h | 0.95305 | 1 |
DC3000/delta hrp 24h | 0.84664 | 0.045 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12626 | 0.556 |
DC3000 delta B/DC3000 delta AB | 0.95996 | 0.745 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.75997 | 0.371 |
Exp 60h | 1.136 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | 140.578 | 1 |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92589 | 0.272 |
transgenic ySAMdc/azygous control (breaker) | 1.23963 | 1 |
transgenic ySAMdc/azygous control (red) | 1.2234 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00144 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99856 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95362 | 1 |
Manapal/WT (break) | 1.10081 | 1 |
Manapal/WT (red) | 1.02504 | 0.413 |
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