Expression of 1-1-7.4.4.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.762670.303
27DAP/17DAP1.157311
39DAP/27DAP0.817650.544
41DAP/39DAP1.137440.844
42DAP/41DAP1.296130.825
43DAP/42DAP1.057991
47DAP/43DAP1.072940.689
52DAP/47DAP1.31660.521
57DAP/52DAP1.307330.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.982730.589
17DAP/reference1.099980.051
27DAP/reference1.039870.539
39DAP/reference1.048350.169
41DAP/reference1.161450.022
42DAP/reference0.961440.072
43DAP/reference1.024110.758
47DAP/reference0.881510.007
52DAP/reference0.901210.143
57DAP/reference0.848450.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.138130.372
27DAP/17DAP0.988380.943
39DAP/27DAP0.871930.338
41DAP/39DAP0.914430.747
42DAP/41DAP1.040840.984
43DAP/42DAP1.037640.746
47DAP/43DAP0.9230.656
52DAP/47DAP1.105080.676
57DAP/52DAP1.2970.259
57DAP/7DAP0.946730.219

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.172240.144
17DAP/reference1.465840.007
27DAP/reference1.506940.007
39DAP/reference1.791070.007
41DAP/reference1.667980.015
42DAP/reference1.814670.007
43DAP/reference1.93340.008
47DAP/reference1.175160.48
52DAP/reference1.546130.01
57DAP/reference1.284860.016

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.157920.156
17DAP/reference1.094860.348
27DAP/reference1.018791
39DAP/reference1.070530.556
41DAP/reference1.022721
42DAP/reference1.025610.934
43DAP/reference1.124780.401
47DAP/reference1.015420.89
52DAP/reference1.074550.498
57DAP/reference1.124010.64

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.373810.021
17DAP/reference1.094730.551
27DAP/reference1.332950.034
39DAP/reference1.0860.227
41DAP/reference1.307160.093
42DAP/reference1.132930.775
43DAP/reference1.105170.755
47DAP/reference0.935520.278
52DAP/reference1.331170.106
57DAP/reference0.744960.051

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.03760.966
26DAP/20DAP1.058631
34DAP/26DAP1.144641
51DAP/34DAP0.67930.274
52DAP/51DAP1.627280.036
53DAP/52DAP0.845550.212
55DAP/53DAP1.134590.504
57DAP/55DAP0.850110.318
62DAP/57DAP1.144490.723
68DAP/62DAP0.964760.81
68DAP/14DAP0.641070.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.69930.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.106910.478
Immature Eggplant/Mature Eggplant1.36379
Ripe Pepper/Ripe Tomato0.570870.224
Mature Eggplant/Ripe Tomato0.76782

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.179470.742
1-1-2/M821.37117
12-2/M82N/AN/A
12-4/M821.10166
1-3/M820.92248
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.89471
3-2/M821.39553
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.31847
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.952651
7-2/M820.96822
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.940371
IL2-6/WTpooled0.806410.473
IL7-5/WTpooled1.468420.792
IL7-3/WTpooled0.901260.418
IL12-4/WTpooled1.091430.785
IL1-4/WTpooled0.97660.834
WT/WTpooled0.987431

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.93940.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.038130.921
DC3000/delta hrp 6h0.984660.95
DC3000/delta hrp 12h0.953051
DC3000/delta hrp 24h0.846640.045

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.126260.556
DC3000 delta B/DC3000 delta AB0.959960.745

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.759970.371
Exp 60h1.1360.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1140.5781
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.925890.272
transgenic ySAMdc/azygous control (breaker)1.239631
transgenic ySAMdc/azygous control (red)1.22340.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001440.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.998561

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.953621
Manapal/WT (break)1.100811
Manapal/WT (red)1.025040.413