Expression of 1-1-7.4.4.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87269 | 0.445 |
27DAP/17DAP | 1.24471 | 0.761 |
39DAP/27DAP | 0.93204 | 0.573 |
41DAP/39DAP | 1.00606 | 0.958 |
42DAP/41DAP | 1.29268 | 0.949 |
43DAP/42DAP | 1.01647 | 0.937 |
47DAP/43DAP | 1.13292 | 0.576 |
52DAP/47DAP | 1.52866 | 0.367 |
57DAP/52DAP | 1.32722 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16803 | 0.04 |
17DAP/reference | 0.9729 | 0.567 |
27DAP/reference | 1.00352 | 1 |
39DAP/reference | 1.05831 | 0.368 |
41DAP/reference | 1.02758 | 0.808 |
42DAP/reference | 1.05655 | 0.398 |
43DAP/reference | 0.95784 | 0.331 |
47DAP/reference | 1.0653 | 0.478 |
52DAP/reference | 1.119 | 0.633 |
57DAP/reference | 0.66966 | 0.147 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0789 | 0.716 |
27DAP/17DAP | 0.92347 | 0.854 |
39DAP/27DAP | 0.87391 | 0.45 |
41DAP/39DAP | 1.78282 | 0.157 |
42DAP/41DAP | 0.78337 | 0.127 |
43DAP/42DAP | 0.9605 | 0.774 |
47DAP/43DAP | 0.96919 | 0.87 |
52DAP/47DAP | 1.09744 | 0.826 |
57DAP/52DAP | 1.49283 | 0.056 |
57DAP/7DAP | 1.62612 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12745 | 0.311 |
17DAP/reference | 1.42146 | 0.008 |
27DAP/reference | 1.42636 | 0.012 |
39DAP/reference | 1.59699 | 0.048 |
41DAP/reference | 1.5999 | 0.014 |
42DAP/reference | 1.57615 | 0.021 |
43DAP/reference | 1.52234 | 0.02 |
47DAP/reference | 0.99264 | 1 |
52DAP/reference | 1.40515 | 0.015 |
57DAP/reference | 1.28932 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08199 | 0.776 |
17DAP/reference | 0.96952 | 0.626 |
27DAP/reference | 1.19156 | 0.254 |
39DAP/reference | 1.45634 | 0.449 |
41DAP/reference | 0.92484 | 0.348 |
42DAP/reference | 1.16055 | 0.466 |
43DAP/reference | 1.09333 | 0.769 |
47DAP/reference | 1.09934 | 0.264 |
52DAP/reference | 1.12509 | 0.498 |
57DAP/reference | 0.97265 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 4.84421 | 0.017 |
17DAP/reference | 0.98015 | 0.658 |
27DAP/reference | 1.04796 | 0.834 |
39DAP/reference | 1.02256 | 0.912 |
41DAP/reference | 1.23141 | 0.02 |
42DAP/reference | 7.0036 | 0.007 |
43DAP/reference | 5.43933 | 0.012 |
47DAP/reference | 1.03679 | 0.73 |
52DAP/reference | 4.26567 | 0.064 |
57DAP/reference | 1.56054 | 0.028 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.22057 | 0.966 |
26DAP/20DAP | 1.06505 | 1 |
34DAP/26DAP | 1.34021 | 0.819 |
51DAP/34DAP | 0.98372 | 0.743 |
52DAP/51DAP | 1.21235 | 0.873 |
53DAP/52DAP | 1.21232 | 0.753 |
55DAP/53DAP | 0.82366 | 0.563 |
57DAP/55DAP | 1.12331 | 0.927 |
62DAP/57DAP | 0.98498 | 1 |
68DAP/62DAP | 1.04296 | 0.984 |
68DAP/14DAP | 1.15814 | 0.915 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.37445 | 0.369 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.2266 | 0.027 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.20988 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.10951 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0522 | 1 |
1-1-2/M82 | 0.86458 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.16315 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.86428 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | 1.24949 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.6431 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.72453 | 0.243 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.10949 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.89596 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.34516 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93799 | 1 |
DC3000/delta hrp 6h | 1.04942 | |
DC3000/delta hrp 12h | 1.15266 | 1 |
DC3000/delta hrp 24h | 1.18836 | 0.202 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21461 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.4236 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.12692 | |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | 1.29468 | 0.283 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | 1.10672 | 0.537 |
Time course 12hI-12hNI | 1.25062 | 0.385 |
Time course 36hI-36hNI | 2.88073 | 0.004 |
Time course 60hI-60hNI | 9.04012 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.32788 | 0.261 |
transgenic ySAMdc/azygous control (breaker) | 0.39794 | 0.142 |
transgenic ySAMdc/azygous control (red) | 1.17102 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96374 | 0.12 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.56697 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.2203 | 0.14 |
Manapal/WT (break) | 1.09538 | 1 |
Manapal/WT (red) | 0.79193 | 0.184 |
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