Expression of 1-1-7.4.4.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.872690.445
27DAP/17DAP1.244710.761
39DAP/27DAP0.932040.573
41DAP/39DAP1.006060.958
42DAP/41DAP1.292680.949
43DAP/42DAP1.016470.937
47DAP/43DAP1.132920.576
52DAP/47DAP1.528660.367
57DAP/52DAP1.327220.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.168030.04
17DAP/reference0.97290.567
27DAP/reference1.003521
39DAP/reference1.058310.368
41DAP/reference1.027580.808
42DAP/reference1.056550.398
43DAP/reference0.957840.331
47DAP/reference1.06530.478
52DAP/reference1.1190.633
57DAP/reference0.669660.147

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.07890.716
27DAP/17DAP0.923470.854
39DAP/27DAP0.873910.45
41DAP/39DAP1.782820.157
42DAP/41DAP0.783370.127
43DAP/42DAP0.96050.774
47DAP/43DAP0.969190.87
52DAP/47DAP1.097440.826
57DAP/52DAP1.492830.056
57DAP/7DAP1.626121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.127450.311
17DAP/reference1.421460.008
27DAP/reference1.426360.012
39DAP/reference1.596990.048
41DAP/reference1.59990.014
42DAP/reference1.576150.021
43DAP/reference1.522340.02
47DAP/reference0.992641
52DAP/reference1.405150.015
57DAP/reference1.289320.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081990.776
17DAP/reference0.969520.626
27DAP/reference1.191560.254
39DAP/reference1.456340.449
41DAP/reference0.924840.348
42DAP/reference1.160550.466
43DAP/reference1.093330.769
47DAP/reference1.099340.264
52DAP/reference1.125090.498
57DAP/reference0.972650.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference4.844210.017
17DAP/reference0.980150.658
27DAP/reference1.047960.834
39DAP/reference1.022560.912
41DAP/reference1.231410.02
42DAP/reference7.00360.007
43DAP/reference5.439330.012
47DAP/reference1.036790.73
52DAP/reference4.265670.064
57DAP/reference1.560540.028

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.220570.966
26DAP/20DAP1.065051
34DAP/26DAP1.340210.819
51DAP/34DAP0.983720.743
52DAP/51DAP1.212350.873
53DAP/52DAP1.212320.753
55DAP/53DAP0.823660.563
57DAP/55DAP1.123310.927
62DAP/57DAP0.984981
68DAP/62DAP1.042960.984
68DAP/14DAP1.158140.915

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.374450.369

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.22660.027
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.209880.224
Mature Eggplant/Ripe Tomato0.10951

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.05221
1-1-2/M820.86458
12-2/M82N/AN/A
12-4/M821.16315
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M820.86428
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M821.24949
6-3/M82N/AN/A
7-1/M821.6431
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.724530.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.10949
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.89596
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.345160.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.937991
DC3000/delta hrp 6h1.04942
DC3000/delta hrp 12h1.152661
DC3000/delta hrp 24h1.188360.202

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.214611
Exp 36hN/AN/A
Exp 60h1.42360.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.12692
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row11.294680.283
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNI1.106720.537
Time course 12hI-12hNI1.250620.385
Time course 36hI-36hNI2.880730.004
Time course 60hI-60hNI9.040120.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.327880.261
transgenic ySAMdc/azygous control (breaker)0.397940.142
transgenic ySAMdc/azygous control (red)1.171020.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.963740.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.566970.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.22030.14
Manapal/WT (break)1.095381
Manapal/WT (red)0.791930.184