Expression of 1-1-7.4.5.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.08020.838
27DAP/17DAP0.901720.779
39DAP/27DAP1.133680.572
41DAP/39DAP1.030070.925
42DAP/41DAP1.204770.876
43DAP/42DAP1.027321
47DAP/43DAP1.496970.232
52DAP/47DAP0.904540.683
57DAP/52DAP1.319920.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.929820.352
17DAP/reference0.967840.597
27DAP/reference0.863670.194
39DAP/reference0.857310.118
41DAP/reference0.829460.085
42DAP/reference0.940440.157
43DAP/reference1.016050.982
47DAP/reference1.018271
52DAP/reference1.211650.388
57DAP/reference1.147470.109

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.96810.697
27DAP/17DAP0.91320.821
39DAP/27DAP1.169340.565
41DAP/39DAP0.965070.923
42DAP/41DAP1.314950.084
43DAP/42DAP1.008991
47DAP/43DAP1.089680.708
52DAP/47DAP1.114610.724
57DAP/52DAP1.815930.033
57DAP/7DAP1.328451

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.068470.6
17DAP/reference1.048470.971
27DAP/reference1.203690.453
39DAP/reference1.120050.297
41DAP/reference1.017670.848
42DAP/reference1.138820.233
43DAP/reference1.213060.056
47DAP/reference1.060770.868
52DAP/reference1.005760.679
57DAP/reference0.982680.513

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.915110.257
17DAP/reference1.049390.941
27DAP/reference1.052510.961
39DAP/reference1.039931
41DAP/reference0.856050.089
42DAP/reference0.863940.081
43DAP/reference0.937260.45
47DAP/reference0.835110.017
52DAP/reference1.036831
57DAP/reference1.10840.345

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01991
17DAP/reference0.904380.186
27DAP/reference1.063460.695
39DAP/reference1.104150.12
41DAP/reference0.967560.459
42DAP/reference1.066090.863
43DAP/reference1.014250.66
47DAP/reference0.853320.109
52DAP/reference1.131190.42
57DAP/reference1.485330.1

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.503480.47
26DAP/20DAP1.391640.206
34DAP/26DAP0.803650.606
51DAP/34DAP0.896760.649
52DAP/51DAP1.020071
53DAP/52DAP0.692660.19
55DAP/53DAP0.886560.389
57DAP/55DAP1.182610.71
62DAP/57DAP0.854640.28
68DAP/62DAP1.23690.689
68DAP/14DAP1.120410.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.120111

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.712340.268
Mature Green Tomato/Ripe Tomato0.868110.411
Immature Eggplant/Mature Eggplant1.056050.606
Ripe Pepper/Ripe Tomato0.588810.224
Mature Eggplant/Ripe Tomato1.90530.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.157451
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.35987
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.80013
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.91
7-2/M822.1096
9-3-2/M821.0021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.61922
IL2-6/WTpooled1.16666
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.859071
IL12-4/WTpooled0.934861
IL1-4/WTpooled0.973081
WT/WTpooled0.866981

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.240580.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.873821
DC3000/delta hrp 6h1.052721
DC3000/delta hrp 12h0.94481
DC3000/delta hrp 24h1.030110.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.1257
DC3000 delta B/DC3000 delta AB1.55429

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.973191
Exp 36h1.602670.693
Exp 60h1.390320.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02511
Var 0h1.117250.936
Var 12h I row2-row11.085310.654
Var 12h NI row2-row11.070851
Var 36h I row2-row11.133681
Var 36h NI row2-row10.85030.61
Var 60h I row2-row10.817660.293
Var 60h NI row2-row10.953320.977
Time course 0hI-0hNI1.020211
Time course 12hI-12hNI1.111750.467
Time course 36hI-36hNI1.788580.005
Time course 60hI-60hNI2.275450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.991690.789
transgenic ySAMdc/azygous control (breaker)1.193650.178
transgenic ySAMdc/azygous control (red)1.121940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.948010.208

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.889930.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.882761
Manapal/WT (break)0.733931
Manapal/WT (red)1.139961