Expression of 1-1-7.4.6.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.84306 | 0.033 |
27DAP/17DAP | 1.73796 | 0.267 |
39DAP/27DAP | 3.14912 | 0.074 |
41DAP/39DAP | 1.75541 | 0.252 |
42DAP/41DAP | 2.29859 | 0.043 |
43DAP/42DAP | 2.77888 | 0.299 |
47DAP/43DAP | 0.42957 | 0.049 |
52DAP/47DAP | 0.73319 | 0.339 |
57DAP/52DAP | 1.07792 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90028 | 0.132 |
17DAP/reference | 1.07114 | 0.546 |
27DAP/reference | 1.00989 | 0.966 |
39DAP/reference | 1.084 | 0.218 |
41DAP/reference | 0.9373 | 0.434 |
42DAP/reference | 0.82625 | 0.029 |
43DAP/reference | 1.03472 | 0.787 |
47DAP/reference | 0.94542 | 0.242 |
52DAP/reference | 0.93323 | 0.3 |
57DAP/reference | 1.01519 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.39888 | 0.06 |
27DAP/17DAP | 1.65469 | 0.032 |
39DAP/27DAP | 3.81914 | 0.04 |
41DAP/39DAP | 0.31478 | 0.013 |
42DAP/41DAP | 3.85603 | 0.002 |
43DAP/42DAP | 5.9816 | 0.013 |
47DAP/43DAP | 0.62954 | 0.016 |
52DAP/47DAP | 2.68172 | 0.048 |
57DAP/52DAP | 1.31733 | 0.571 |
57DAP/7DAP | 21.4213 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.45709 | 0.058 |
17DAP/reference | 0.55597 | 0.011 |
27DAP/reference | 0.62292 | 0.01 |
39DAP/reference | 0.76968 | 0.011 |
41DAP/reference | 0.80941 | 0.036 |
42DAP/reference | 0.98309 | 0.506 |
43DAP/reference | 0.9798 | 0.459 |
47DAP/reference | 0.9395 | 0.504 |
52DAP/reference | 0.47606 | 0.012 |
57DAP/reference | 0.53375 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99488 | 0.884 |
17DAP/reference | 1.00065 | 0.673 |
27DAP/reference | 1.00306 | 0.642 |
39DAP/reference | 0.89466 | 0.208 |
41DAP/reference | 0.93077 | 0.212 |
42DAP/reference | 0.98266 | 0.594 |
43DAP/reference | 0.88321 | 0.277 |
47DAP/reference | 0.85345 | 0.058 |
52DAP/reference | 0.96964 | 0.433 |
57DAP/reference | 0.95717 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.37115 | 0.029 |
17DAP/reference | 0.8366 | 0.249 |
27DAP/reference | 0.47974 | 0.025 |
39DAP/reference | 0.66594 | 0.014 |
41DAP/reference | 0.80226 | 0.096 |
42DAP/reference | 1.54628 | 0.108 |
43DAP/reference | 2.1332 | 0.065 |
47DAP/reference | 0.99673 | 0.61 |
52DAP/reference | 1.35868 | 0.103 |
57DAP/reference | 0.91813 | 0.208 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15058 | 0.966 |
26DAP/20DAP | 1.16657 | 0.62 |
34DAP/26DAP | 0.80394 | 0.561 |
51DAP/34DAP | 1.25291 | 0.581 |
52DAP/51DAP | 0.88818 | 1 |
53DAP/52DAP | 0.9469 | 0.897 |
55DAP/53DAP | 0.73491 | 0.144 |
57DAP/55DAP | 1.10741 | 0.927 |
62DAP/57DAP | 0.75937 | 0.004 |
68DAP/62DAP | 0.7196 | 0.429 |
68DAP/14DAP | 1.05477 | 0.85 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 53.2507 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.16449 | 0.014 |
Immature Eggplant/Mature Eggplant | 4.941 | |
Ripe Pepper/Ripe Tomato | 3.29162 | 1 |
Mature Eggplant/Ripe Tomato | 0.22363 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.16414 | 0.877 |
1-1-2/M82 | 1.09373 | 1 |
12-2/M82 | 0.90551 | 0.955 |
12-4/M82 | 1.54346 | 1 |
1-3/M82 | 2.28694 | 0.277 |
2-1-1/M82 | 1.15294 | 0.764 |
2-1/M82 | 1.34892 | 1 |
2-6/M82 | 0.95224 | 1 |
3-2/M82 | 1.37466 | 0.717 |
4-1-1/M82 | 0.87633 | 0.959 |
4-1/M82 | 3.2423 | 0.512 |
4-3-2/M82 | 0.68131 | 0.698 |
4-3/M82 | 0.93103 | 0.72 |
5-3/M82 | 0.73817 | 0.642 |
6-2/M82 | 1.22694 | 1 |
6-3/M82 | 1.09848 | 1 |
7-1/M82 | 1.04792 | 0.992 |
7-2/M82 | 1.67587 | 0.385 |
9-3-2/M82 | 1.59874 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.1671 | 0.493 |
IL2-6/WTpooled | 1.18372 | 0.584 |
IL7-5/WTpooled | 0.52333 | |
IL7-3/WTpooled | 1.11453 | 1 |
IL12-4/WTpooled | 0.83331 | 0.71 |
IL1-4/WTpooled | 0.98249 | 1 |
WT/WTpooled | 0.99899 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 2.01035 | 0.139 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95073 | 1 |
DC3000/delta hrp 6h | 1.09336 | 1 |
DC3000/delta hrp 12h | 0.95102 | 1 |
DC3000/delta hrp 24h | 1.78979 | 0.05 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97095 | 1 |
Exp 36h | 0.92205 | 0.879 |
Exp 60h | 0.77257 | 0.522 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.27047 | 1 |
Var 0h | 0.58625 | 1 |
Var 12h I row2-row1 | 0.93965 | 0.565 |
Var 12h NI row2-row1 | 0.95826 | 0.906 |
Var 36h I row2-row1 | 1.04727 | 1 |
Var 36h NI row2-row1 | 0.49084 | 0.706 |
Var 60h I row2-row1 | 0.72194 | 0.374 |
Var 60h NI row2-row1 | 0.92179 | 0.756 |
Time course 0hI-0hNI | 0.95328 | 0.833 |
Time course 12hI-12hNI | 1.08105 | 1 |
Time course 36hI-36hNI | 2.07994 | 0.01 |
Time course 60hI-60hNI | 6.31735 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.097 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 0.72498 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.06935 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08228 | 0.148 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79781 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.74942 | 0.088 |
Manapal/WT (break) | 1.43911 | 0.123 |
Manapal/WT (red) | 0.88546 | 0.607 |
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