Expression of 1-1-7.4.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.843060.033
27DAP/17DAP1.737960.267
39DAP/27DAP3.149120.074
41DAP/39DAP1.755410.252
42DAP/41DAP2.298590.043
43DAP/42DAP2.778880.299
47DAP/43DAP0.429570.049
52DAP/47DAP0.733190.339
57DAP/52DAP1.077921

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.900280.132
17DAP/reference1.071140.546
27DAP/reference1.009890.966
39DAP/reference1.0840.218
41DAP/reference0.93730.434
42DAP/reference0.826250.029
43DAP/reference1.034720.787
47DAP/reference0.945420.242
52DAP/reference0.933230.3
57DAP/reference1.015191

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.398880.06
27DAP/17DAP1.654690.032
39DAP/27DAP3.819140.04
41DAP/39DAP0.314780.013
42DAP/41DAP3.856030.002
43DAP/42DAP5.98160.013
47DAP/43DAP0.629540.016
52DAP/47DAP2.681720.048
57DAP/52DAP1.317330.571
57DAP/7DAP21.42130.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.457090.058
17DAP/reference0.555970.011
27DAP/reference0.622920.01
39DAP/reference0.769680.011
41DAP/reference0.809410.036
42DAP/reference0.983090.506
43DAP/reference0.97980.459
47DAP/reference0.93950.504
52DAP/reference0.476060.012
57DAP/reference0.533750.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994880.884
17DAP/reference1.000650.673
27DAP/reference1.003060.642
39DAP/reference0.894660.208
41DAP/reference0.930770.212
42DAP/reference0.982660.594
43DAP/reference0.883210.277
47DAP/reference0.853450.058
52DAP/reference0.969640.433
57DAP/reference0.957170.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.371150.029
17DAP/reference0.83660.249
27DAP/reference0.479740.025
39DAP/reference0.665940.014
41DAP/reference0.802260.096
42DAP/reference1.546280.108
43DAP/reference2.13320.065
47DAP/reference0.996730.61
52DAP/reference1.358680.103
57DAP/reference0.918130.208

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.150580.966
26DAP/20DAP1.166570.62
34DAP/26DAP0.803940.561
51DAP/34DAP1.252910.581
52DAP/51DAP0.888181
53DAP/52DAP0.94690.897
55DAP/53DAP0.734910.144
57DAP/55DAP1.107410.927
62DAP/57DAP0.759370.004
68DAP/62DAP0.71960.429
68DAP/14DAP1.054770.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker53.25070.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.164490.014
Immature Eggplant/Mature Eggplant4.941
Ripe Pepper/Ripe Tomato3.291621
Mature Eggplant/Ripe Tomato0.22363

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.164140.877
1-1-2/M821.093731
12-2/M820.905510.955
12-4/M821.543461
1-3/M822.286940.277
2-1-1/M821.152940.764
2-1/M821.348921
2-6/M820.952241
3-2/M821.374660.717
4-1-1/M820.876330.959
4-1/M823.24230.512
4-3-2/M820.681310.698
4-3/M820.931030.72
5-3/M820.738170.642
6-2/M821.226941
6-3/M821.098481
7-1/M821.047920.992
7-2/M821.675870.385
9-3-2/M821.598741

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.16710.493
IL2-6/WTpooled1.183720.584
IL7-5/WTpooled0.52333
IL7-3/WTpooled1.114531
IL12-4/WTpooled0.833310.71
IL1-4/WTpooled0.982491
WT/WTpooled0.998991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.010350.139

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.950731
DC3000/delta hrp 6h1.093361
DC3000/delta hrp 12h0.951021
DC3000/delta hrp 24h1.789790.05

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.970951
Exp 36h0.922050.879
Exp 60h0.772570.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.270471
Var 0h0.586251
Var 12h I row2-row10.939650.565
Var 12h NI row2-row10.958260.906
Var 36h I row2-row11.047271
Var 36h NI row2-row10.490840.706
Var 60h I row2-row10.721940.374
Var 60h NI row2-row10.921790.756
Time course 0hI-0hNI0.953280.833
Time course 12hI-12hNI1.081051
Time course 36hI-36hNI2.079940.01
Time course 60hI-60hNI6.317350.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.0970.36
transgenic ySAMdc/azygous control (breaker)0.724980.131
transgenic ySAMdc/azygous control (red)1.069351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.082280.148

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.797810.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.749420.088
Manapal/WT (break)1.439110.123
Manapal/WT (red)0.885460.607