Expression of 1-1-7.4.6.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89901 | 0.413 |
27DAP/17DAP | 0.84482 | 0.782 |
39DAP/27DAP | 1.16435 | 0.725 |
41DAP/39DAP | 0.90244 | 0.681 |
42DAP/41DAP | 0.79846 | 0.774 |
43DAP/42DAP | 0.90364 | 0.827 |
47DAP/43DAP | 0.9673 | 0.835 |
52DAP/47DAP | 0.6635 | 0.278 |
57DAP/52DAP | 0.89403 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94144 | 0.231 |
17DAP/reference | 1.14828 | 0.038 |
27DAP/reference | 1.02429 | 0.966 |
39DAP/reference | 1.05477 | 0.747 |
41DAP/reference | 1.14202 | 0.203 |
42DAP/reference | 0.94335 | 0.099 |
43DAP/reference | 0.98194 | 0.728 |
47DAP/reference | 1.00631 | 0.636 |
52DAP/reference | 0.95779 | 0.371 |
57DAP/reference | 0.98668 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11445 | 0.662 |
27DAP/17DAP | 1.02859 | 1 |
39DAP/27DAP | 0.9508 | 0.673 |
41DAP/39DAP | 1.27719 | 0.362 |
42DAP/41DAP | 0.95957 | 0.708 |
43DAP/42DAP | 1.12991 | 0.746 |
47DAP/43DAP | 0.90713 | 0.554 |
52DAP/47DAP | 1.24019 | 0.414 |
57DAP/52DAP | 1.1403 | 0.753 |
57DAP/7DAP | 1.19132 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8971 | 0.402 |
17DAP/reference | 1.04662 | 0.693 |
27DAP/reference | 1.05203 | |
39DAP/reference | 0.96329 | 0.552 |
41DAP/reference | 1.07221 | 1 |
42DAP/reference | 1.11652 | 1 |
43DAP/reference | 1.15175 | 0.408 |
47DAP/reference | 1.02901 | 1 |
52DAP/reference | 1.32672 | 0.029 |
57DAP/reference | 1.31252 | 0.331 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97841 | 0.736 |
17DAP/reference | 1.09839 | 0.557 |
27DAP/reference | 1.07898 | 0.798 |
39DAP/reference | 1.08449 | 0.588 |
41DAP/reference | 1.15797 | 0.234 |
42DAP/reference | 0.95386 | 0.321 |
43DAP/reference | 1.16143 | 0.179 |
47DAP/reference | 1.01144 | 1 |
52DAP/reference | 1.03738 | 0.882 |
57DAP/reference | 0.97564 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04692 | 1 |
17DAP/reference | 0.85909 | 0.452 |
27DAP/reference | 0.89937 | 0.49 |
39DAP/reference | 1.06734 | 0.711 |
41DAP/reference | 1.03192 | 1 |
42DAP/reference | 0.95449 | 0.552 |
43DAP/reference | 1.22189 | 0.19 |
47DAP/reference | 1.10509 | 0.355 |
52DAP/reference | 0.87818 | 0.327 |
57DAP/reference | 1.25654 | 0.078 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02486 | 1 |
26DAP/20DAP | 1.22456 | 0.558 |
34DAP/26DAP | 1.16808 | 1 |
51DAP/34DAP | 0.96232 | 0.835 |
52DAP/51DAP | 1.50992 | 0.039 |
53DAP/52DAP | 0.899 | 0.544 |
55DAP/53DAP | 1.25887 | 0.527 |
57DAP/55DAP | 1.01727 | 0.854 |
62DAP/57DAP | 0.73647 | 0.162 |
68DAP/62DAP | 1.1202 | 0.8 |
68DAP/14DAP | 0.66097 | 0.075 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.54373 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.15967 | 1 |
Mature Eggplant/Ripe Tomato | 0.43139 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94023 | 0.944 |
1-1-2/M82 | 0.83146 | 0.754 |
12-2/M82 | 1.03198 | 1 |
12-4/M82 | 1.06943 | 0.694 |
1-3/M82 | 0.82765 | 0.378 |
2-1-1/M82 | 1.27756 | 0.249 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02216 | 1 |
3-2/M82 | 1.07942 | |
4-1-1/M82 | 0.99068 | 1 |
4-1/M82 | 1.5192 | |
4-3-2/M82 | 1.02291 | |
4-3/M82 | 0.86745 | 0.72 |
5-3/M82 | 0.87432 | 1 |
6-2/M82 | 1.09157 | 1 |
6-3/M82 | 0.94266 | 1 |
7-1/M82 | 1.33202 | 1 |
7-2/M82 | 0.89088 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.30535 | 0.277 |
IL2-6/WTpooled | 1.35989 | 0.456 |
IL7-5/WTpooled | 0.96521 | 1 |
IL7-3/WTpooled | 1.25816 | 1 |
IL12-4/WTpooled | 1.04749 | 0.891 |
IL1-4/WTpooled | 1.07538 | 1 |
WT/WTpooled | 0.89355 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96271 | |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03931 | 0.921 |
DC3000/delta hrp 6h | 1.11869 | 1 |
DC3000/delta hrp 12h | 0.83035 | 1 |
DC3000/delta hrp 24h | 1.20921 | 0.151 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.30927 | |
DC3000 delta B/DC3000 delta AB | 0.61366 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.88732 | 1 |
Exp 36h | 0.99821 | 1 |
Exp 60h | 1.34256 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.10167 | 1 |
Var 0h | 0.88848 | 0.933 |
Var 12h I row2-row1 | 1.11625 | |
Var 12h NI row2-row1 | 1.00614 | 1 |
Var 36h I row2-row1 | 1.06785 | 0.291 |
Var 36h NI row2-row1 | 0.97301 | 0.852 |
Var 60h I row2-row1 | 0.94977 | 0.439 |
Var 60h NI row2-row1 | 1.11968 | 0.904 |
Time course 0hI-0hNI | 0.90469 | 0.6 |
Time course 12hI-12hNI | 0.8754 | 0.107 |
Time course 36hI-36hNI | 0.70424 | 0.091 |
Time course 60hI-60hNI | 0.54094 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03993 | 0.321 |
transgenic ySAMdc/azygous control (breaker) | 1.41837 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.15808 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99848 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08793 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95185 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.85434 | 0.503 |
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