Expression of 1-1-7.4.6.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.899010.413
27DAP/17DAP0.844820.782
39DAP/27DAP1.164350.725
41DAP/39DAP0.902440.681
42DAP/41DAP0.798460.774
43DAP/42DAP0.903640.827
47DAP/43DAP0.96730.835
52DAP/47DAP0.66350.278
57DAP/52DAP0.894030.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.941440.231
17DAP/reference1.148280.038
27DAP/reference1.024290.966
39DAP/reference1.054770.747
41DAP/reference1.142020.203
42DAP/reference0.943350.099
43DAP/reference0.981940.728
47DAP/reference1.006310.636
52DAP/reference0.957790.371
57DAP/reference0.986680.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.114450.662
27DAP/17DAP1.028591
39DAP/27DAP0.95080.673
41DAP/39DAP1.277190.362
42DAP/41DAP0.959570.708
43DAP/42DAP1.129910.746
47DAP/43DAP0.907130.554
52DAP/47DAP1.240190.414
57DAP/52DAP1.14030.753
57DAP/7DAP1.191321

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.89710.402
17DAP/reference1.046620.693
27DAP/reference1.05203
39DAP/reference0.963290.552
41DAP/reference1.072211
42DAP/reference1.116521
43DAP/reference1.151750.408
47DAP/reference1.029011
52DAP/reference1.326720.029
57DAP/reference1.312520.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978410.736
17DAP/reference1.098390.557
27DAP/reference1.078980.798
39DAP/reference1.084490.588
41DAP/reference1.157970.234
42DAP/reference0.953860.321
43DAP/reference1.161430.179
47DAP/reference1.011441
52DAP/reference1.037380.882
57DAP/reference0.975640.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046921
17DAP/reference0.859090.452
27DAP/reference0.899370.49
39DAP/reference1.067340.711
41DAP/reference1.031921
42DAP/reference0.954490.552
43DAP/reference1.221890.19
47DAP/reference1.105090.355
52DAP/reference0.878180.327
57DAP/reference1.256540.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.024861
26DAP/20DAP1.224560.558
34DAP/26DAP1.168081
51DAP/34DAP0.962320.835
52DAP/51DAP1.509920.039
53DAP/52DAP0.8990.544
55DAP/53DAP1.258870.527
57DAP/55DAP1.017270.854
62DAP/57DAP0.736470.162
68DAP/62DAP1.12020.8
68DAP/14DAP0.660970.075

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.543730.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.159671
Mature Eggplant/Ripe Tomato0.43139

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.940230.944
1-1-2/M820.831460.754
12-2/M821.031981
12-4/M821.069430.694
1-3/M820.827650.378
2-1-1/M821.277560.249
2-1/M82N/AN/A
2-6/M821.022161
3-2/M821.07942
4-1-1/M820.990681
4-1/M821.5192
4-3-2/M821.02291
4-3/M820.867450.72
5-3/M820.874321
6-2/M821.091571
6-3/M820.942661
7-1/M821.332021
7-2/M820.890880.796
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.305350.277
IL2-6/WTpooled1.359890.456
IL7-5/WTpooled0.965211
IL7-3/WTpooled1.258161
IL12-4/WTpooled1.047490.891
IL1-4/WTpooled1.075381
WT/WTpooled0.893551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.96271

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039310.921
DC3000/delta hrp 6h1.118691
DC3000/delta hrp 12h0.830351
DC3000/delta hrp 24h1.209210.151

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.30927
DC3000 delta B/DC3000 delta AB0.61366

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.887321
Exp 36h0.998211
Exp 60h1.342560.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.101671
Var 0h0.888480.933
Var 12h I row2-row11.11625
Var 12h NI row2-row11.006141
Var 36h I row2-row11.067850.291
Var 36h NI row2-row10.973010.852
Var 60h I row2-row10.949770.439
Var 60h NI row2-row11.119680.904
Time course 0hI-0hNI0.904690.6
Time course 12hI-12hNI0.87540.107
Time course 36hI-36hNI0.704240.091
Time course 60hI-60hNI0.540940.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.039930.321
transgenic ySAMdc/azygous control (breaker)1.418370.178
transgenic ySAMdc/azygous control (red)1.158080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.998480.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.087930.231

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.951851
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.854340.503