Expression of 1-1-7.4.7.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.902120.532
27DAP/17DAP0.423740.027
39DAP/27DAP0.728650.414
41DAP/39DAP0.597790.047
42DAP/41DAP0.73530.774
43DAP/42DAP1.296510.44
47DAP/43DAP0.449270.049
52DAP/47DAP1.057540.916
57DAP/52DAP1.185080.948

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.29160.007
17DAP/reference0.88280.158
27DAP/reference0.727520.019
39DAP/reference0.707270.028
41DAP/reference0.698740.008
42DAP/reference0.561090.001
43DAP/reference0.668940.015
47DAP/reference0.554510.001
52DAP/reference0.520030.013
57DAP/reference0.633710.009

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.862360.299
27DAP/17DAP0.758850.179
39DAP/27DAP0.46460.028
41DAP/39DAP1.264010.012
42DAP/41DAP0.759340.009
43DAP/42DAP0.729450.022
47DAP/43DAP0.903260.195
52DAP/47DAP0.997110.925
57DAP/52DAP1.105030.5
57DAP/7DAP0.394450.159

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.790220.024
17DAP/reference0.91010.144
27DAP/reference0.504960.01
39DAP/reference0.543040.011
41DAP/reference0.403050.009
42DAP/reference0.318860.01
43DAP/reference0.295710.009
47DAP/reference0.349640.03
52DAP/reference0.360860.01
57DAP/reference0.393420.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.111590.39
17DAP/reference0.885630.143
27DAP/reference0.71360.014
39DAP/reference0.460040.008
41DAP/reference0.580950.01
42DAP/reference0.543590.013
43DAP/reference0.304830.002
47DAP/reference0.556360.01
52DAP/reference0.509870.003
57DAP/reference0.427150.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference3.013990.015
17DAP/reference1.895390.104
27DAP/reference1.380990.034
39DAP/reference1.027160.752
41DAP/reference0.712870.021
42DAP/reference0.557220.016
43DAP/reference0.48590.017
47DAP/reference0.418360.004
52DAP/reference0.407010.047
57DAP/reference0.893820.229

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.257260.966
26DAP/20DAP0.828560.512
34DAP/26DAP1.082181
51DAP/34DAP0.953170.737
52DAP/51DAP0.955531
53DAP/52DAP0.930210.723
55DAP/53DAP1.058140.898
57DAP/55DAP0.999770.938
62DAP/57DAP0.980640.994
68DAP/62DAP1.059591
68DAP/14DAP0.550180.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.733990.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.781360.058
Mature Green Tomato/Ripe Tomato25.3990.015
Immature Eggplant/Mature Eggplant0.336810.057
Ripe Pepper/Ripe Tomato11.38151
Mature Eggplant/Ripe Tomato26.99460.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.876790.944
1-1-2/M820.91194
12-2/M820.677540.678
12-4/M820.8479
1-3/M822.342460.277
2-1-1/M820.99223
2-1/M820.955471
2-6/M821.043880.695
3-2/M822.0895
4-1-1/M821.128541
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.290981
5-3/M821.257670.572
6-2/M821.54823
6-3/M82N/AN/A
7-1/M821.17853
7-2/M821.503350.385
9-3-2/M821.82594

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.910080.247
IL2-6/WTpooled0.932531
IL7-5/WTpooled0.943051
IL7-3/WTpooled0.789510.418
IL12-4/WTpooled0.887421
IL1-4/WTpooled0.886760.415
WT/WTpooled1.008771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.956830.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.929280.545
DC3000/delta hrp 6h0.75882
DC3000/delta hrp 12h1.001351
DC3000/delta hrp 24h0.872490.323

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.425880.025
DC3000 delta B/DC3000 delta AB0.368690.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.997511
Var 0h1.270370.782
Var 12h I row2-row10.779370.338
Var 12h NI row2-row11.041911
Var 36h I row2-row10.703360.805
Var 36h NI row2-row10.968430.645
Var 60h I row2-row11.489790.543
Var 60h NI row2-row10.998021
Time course 0hI-0hNI0.97860.879
Time course 12hI-12hNI0.988520.94
Time course 36hI-36hNI0.941510.317
Time course 60hI-60hNI0.337980.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.083590.326
transgenic ySAMdc/azygous control (breaker)3.708070.162
transgenic ySAMdc/azygous control (red)1.549850.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.581970.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.331910.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)3.439160.084
Manapal/WT (break)12.33610.123
Manapal/WT (red)2.646540.413