Expression of 1-1-7.4.7.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90212 | 0.532 |
27DAP/17DAP | 0.42374 | 0.027 |
39DAP/27DAP | 0.72865 | 0.414 |
41DAP/39DAP | 0.59779 | 0.047 |
42DAP/41DAP | 0.7353 | 0.774 |
43DAP/42DAP | 1.29651 | 0.44 |
47DAP/43DAP | 0.44927 | 0.049 |
52DAP/47DAP | 1.05754 | 0.916 |
57DAP/52DAP | 1.18508 | 0.948 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2916 | 0.007 |
17DAP/reference | 0.8828 | 0.158 |
27DAP/reference | 0.72752 | 0.019 |
39DAP/reference | 0.70727 | 0.028 |
41DAP/reference | 0.69874 | 0.008 |
42DAP/reference | 0.56109 | 0.001 |
43DAP/reference | 0.66894 | 0.015 |
47DAP/reference | 0.55451 | 0.001 |
52DAP/reference | 0.52003 | 0.013 |
57DAP/reference | 0.63371 | 0.009 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86236 | 0.299 |
27DAP/17DAP | 0.75885 | 0.179 |
39DAP/27DAP | 0.4646 | 0.028 |
41DAP/39DAP | 1.26401 | 0.012 |
42DAP/41DAP | 0.75934 | 0.009 |
43DAP/42DAP | 0.72945 | 0.022 |
47DAP/43DAP | 0.90326 | 0.195 |
52DAP/47DAP | 0.99711 | 0.925 |
57DAP/52DAP | 1.10503 | 0.5 |
57DAP/7DAP | 0.39445 | 0.159 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.79022 | 0.024 |
17DAP/reference | 0.9101 | 0.144 |
27DAP/reference | 0.50496 | 0.01 |
39DAP/reference | 0.54304 | 0.011 |
41DAP/reference | 0.40305 | 0.009 |
42DAP/reference | 0.31886 | 0.01 |
43DAP/reference | 0.29571 | 0.009 |
47DAP/reference | 0.34964 | 0.03 |
52DAP/reference | 0.36086 | 0.01 |
57DAP/reference | 0.39342 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11159 | 0.39 |
17DAP/reference | 0.88563 | 0.143 |
27DAP/reference | 0.7136 | 0.014 |
39DAP/reference | 0.46004 | 0.008 |
41DAP/reference | 0.58095 | 0.01 |
42DAP/reference | 0.54359 | 0.013 |
43DAP/reference | 0.30483 | 0.002 |
47DAP/reference | 0.55636 | 0.01 |
52DAP/reference | 0.50987 | 0.003 |
57DAP/reference | 0.42715 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 3.01399 | 0.015 |
17DAP/reference | 1.89539 | 0.104 |
27DAP/reference | 1.38099 | 0.034 |
39DAP/reference | 1.02716 | 0.752 |
41DAP/reference | 0.71287 | 0.021 |
42DAP/reference | 0.55722 | 0.016 |
43DAP/reference | 0.4859 | 0.017 |
47DAP/reference | 0.41836 | 0.004 |
52DAP/reference | 0.40701 | 0.047 |
57DAP/reference | 0.89382 | 0.229 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25726 | 0.966 |
26DAP/20DAP | 0.82856 | 0.512 |
34DAP/26DAP | 1.08218 | 1 |
51DAP/34DAP | 0.95317 | 0.737 |
52DAP/51DAP | 0.95553 | 1 |
53DAP/52DAP | 0.93021 | 0.723 |
55DAP/53DAP | 1.05814 | 0.898 |
57DAP/55DAP | 0.99977 | 0.938 |
62DAP/57DAP | 0.98064 | 0.994 |
68DAP/62DAP | 1.05959 | 1 |
68DAP/14DAP | 0.55018 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.73399 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.78136 | 0.058 |
Mature Green Tomato/Ripe Tomato | 25.399 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.33681 | 0.057 |
Ripe Pepper/Ripe Tomato | 11.3815 | 1 |
Mature Eggplant/Ripe Tomato | 26.9946 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87679 | 0.944 |
1-1-2/M82 | 0.91194 | |
12-2/M82 | 0.67754 | 0.678 |
12-4/M82 | 0.8479 | |
1-3/M82 | 2.34246 | 0.277 |
2-1-1/M82 | 0.99223 | |
2-1/M82 | 0.95547 | 1 |
2-6/M82 | 1.04388 | 0.695 |
3-2/M82 | 2.0895 | |
4-1-1/M82 | 1.12854 | 1 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.29098 | 1 |
5-3/M82 | 1.25767 | 0.572 |
6-2/M82 | 1.54823 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.17853 | |
7-2/M82 | 1.50335 | 0.385 |
9-3-2/M82 | 1.82594 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91008 | 0.247 |
IL2-6/WTpooled | 0.93253 | 1 |
IL7-5/WTpooled | 0.94305 | 1 |
IL7-3/WTpooled | 0.78951 | 0.418 |
IL12-4/WTpooled | 0.88742 | 1 |
IL1-4/WTpooled | 0.88676 | 0.415 |
WT/WTpooled | 1.00877 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95683 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92928 | 0.545 |
DC3000/delta hrp 6h | 0.75882 | |
DC3000/delta hrp 12h | 1.00135 | 1 |
DC3000/delta hrp 24h | 0.87249 | 0.323 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.42588 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.36869 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99751 | 1 |
Var 0h | 1.27037 | 0.782 |
Var 12h I row2-row1 | 0.77937 | 0.338 |
Var 12h NI row2-row1 | 1.04191 | 1 |
Var 36h I row2-row1 | 0.70336 | 0.805 |
Var 36h NI row2-row1 | 0.96843 | 0.645 |
Var 60h I row2-row1 | 1.48979 | 0.543 |
Var 60h NI row2-row1 | 0.99802 | 1 |
Time course 0hI-0hNI | 0.9786 | 0.879 |
Time course 12hI-12hNI | 0.98852 | 0.94 |
Time course 36hI-36hNI | 0.94151 | 0.317 |
Time course 60hI-60hNI | 0.33798 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08359 | 0.326 |
transgenic ySAMdc/azygous control (breaker) | 3.70807 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.54985 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.58197 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.33191 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.43916 | 0.084 |
Manapal/WT (break) | 12.3361 | 0.123 |
Manapal/WT (red) | 2.64654 | 0.413 |
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