Expression of 1-1-7.4.8.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.727020.428
27DAP/17DAP0.906830.831
39DAP/27DAP2.228760.07
41DAP/39DAP1.331670.772
42DAP/41DAP1.104531
43DAP/42DAP1.775190.096
47DAP/43DAP1.40720.412
52DAP/47DAP1.037970.903
57DAP/52DAP1.60520.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.213690.441
17DAP/referenceN/AN/A
27DAP/reference1.87006
39DAP/reference0.900560.72
41DAP/reference0.901170.667
42DAP/reference1.084350.731
43DAP/referenceN/AN/A
47DAP/reference1.183490.318
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.78367
27DAP/17DAP1.258980.848
39DAP/27DAP1.08164
41DAP/39DAP0.837410.861
42DAP/41DAP1.529110.984
43DAP/42DAP0.45559
47DAP/43DAP1.20120.414
52DAP/47DAP1.641010.36
57DAP/52DAP0.663430.272
57DAP/7DAP1.33362

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.755420.295
27DAP/reference0.95082
39DAP/reference0.657520.043
41DAP/reference0.998530.341
42DAP/reference0.518320.123
43DAP/reference1.241910.873
47DAP/reference0.858420.671
52DAP/referenceN/AN/A
57DAP/reference1.463990.571

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.807620.048
17DAP/reference1.797140.543
27DAP/reference1.10525
39DAP/reference0.968270.539
41DAP/reference0.4592
42DAP/reference0.69798
43DAP/reference0.937820.527
47DAP/reference0.976290.66
52DAP/reference1.279940.498
57DAP/reference1.082740.93

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.61858
41DAP/referenceN/AN/A
42DAP/reference1.13735
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference1.538350.268
57DAP/reference0.661910.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.904510.966
26DAP/20DAP0.32794
34DAP/26DAP0.739360.44
51DAP/34DAP0.95550.714
52DAP/51DAP0.775681
53DAP/52DAP1.138110.921
55DAP/53DAP0.827410.53
57DAP/55DAP0.88568
62DAP/57DAP1.726230.002
68DAP/62DAPN/AN/A
68DAP/14DAP1.3233

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.681820.105

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.097050.493
IL2-6/WTpooled1.556890.419
IL7-5/WTpooled1.83050.792
IL7-3/WTpooled1.137771
IL12-4/WTpooled1.061370.839
IL1-4/WTpooled1.690910.426
WT/WTpooled0.921751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.04063
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.260730.782
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.839430.381
Manapal/WT (red)N/AN/A