Expression of 1-1-7.4.9.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.791610.111
27DAP/17DAP0.697070.116
39DAP/27DAP0.821370.326
41DAP/39DAP1.515430.584
42DAP/41DAP0.887621
43DAP/42DAP0.913230.807
47DAP/43DAP0.810080.416
52DAP/47DAP1.378770.562
57DAP/52DAP1.150.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.149960.188
17DAP/reference0.940630.224
27DAP/reference0.97120.471
39DAP/reference1.021810.639
41DAP/reference0.938230.341
42DAP/reference1.018670.467
43DAP/reference0.949180.519
47DAP/reference1.003330.764
52DAP/reference0.960630.405
57DAP/reference0.91780.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.875170.073
27DAP/17DAP1.051610.798
39DAP/27DAP0.886960.121
41DAP/39DAP0.998081
42DAP/41DAP1.018930.999
43DAP/42DAP0.933340.068
47DAP/43DAP1.036180.889
52DAP/47DAP1.040830.868
57DAP/52DAP0.974590.695
57DAP/7DAP1.09301

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121580.197
17DAP/reference1.122040.269
27DAP/reference1.046260.197
39DAP/reference0.989510.64
41DAP/reference0.976210.375
42DAP/reference0.957120.021
43DAP/reference1.041910.2
47DAP/reference0.95410.504
52DAP/reference0.988120.621
57DAP/reference1.029640.907

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.140770.17
17DAP/reference1.166120.039
27DAP/reference1.053790.715
39DAP/reference0.949090.306
41DAP/reference0.960880.299
42DAP/reference0.973420.392
43DAP/reference0.996360.787
47DAP/reference0.954130.214
52DAP/reference0.966220.302
57DAP/reference0.946590.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.119650.23
17DAP/reference1.146020.241
27DAP/reference1.104770.078
39DAP/reference1.043810.512
41DAP/reference1.066580.213
42DAP/reference1.061670.701
43DAP/reference1.060530.499
47DAP/reference1.097550.228
52DAP/reference1.010251
57DAP/reference1.050650.682

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.04420.966
26DAP/20DAP0.978751
34DAP/26DAP1.06391
51DAP/34DAP0.931460.472
52DAP/51DAP1.03340.758
53DAP/52DAP0.9167
55DAP/53DAP1.06689
57DAP/55DAP0.966410.828
62DAP/57DAP0.992381
68DAP/62DAP0.984940.834
68DAP/14DAP0.999521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.181310.035

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.041691
Mature Green Tomato/Ripe Tomato3.053370.016
Immature Eggplant/Mature Eggplant0.712220.176
Ripe Pepper/Ripe Tomato1.622620.258
Mature Eggplant/Ripe Tomato1.059191

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.942560.613
1-1-2/M820.95810.958
12-2/M820.923340.955
12-4/M820.954821
1-3/M820.989911
2-1-1/M820.91384
2-1/M820.53696
2-6/M820.972261
3-2/M821.074210.84
4-1-1/M821.194381
4-1/M820.690870.998
4-3-2/M821.29596
4-3/M821.046781
5-3/M820.991381
6-2/M821.00811
6-3/M820.973521
7-1/M820.964350.443
7-2/M820.997381
9-3-2/M820.8861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.299020.277
IL2-6/WTpooled1.088560.788
IL7-5/WTpooled1.00351
IL7-3/WTpooled1.025411
IL12-4/WTpooled1.09030.532
IL1-4/WTpooled1.017191
WT/WTpooled1.00151

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.941080.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.993991
DC3000/delta hrp 6h0.962920.95
DC3000/delta hrp 12h1.058891
DC3000/delta hrp 24h1.020740.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.67030.024
DC3000 delta B/DC3000 delta AB0.767440.024

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.967051
Exp 36h0.836490.504
Exp 60h0.768090.343

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.972141
Var 0h0.862990.933
Var 12h I row2-row10.844040.338
Var 12h NI row2-row10.915190.713
Var 36h I row2-row11.206520.601
Var 36h NI row2-row11.220831
Var 60h I row2-row10.956060.582
Var 60h NI row2-row10.946030.866
Time course 0hI-0hNI1.034480.833
Time course 12hI-12hNI0.993211
Time course 36hI-36hNI0.921590.225
Time course 60hI-60hNI0.547540.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.160590.305
transgenic ySAMdc/azygous control (breaker)1.508830.248
transgenic ySAMdc/azygous control (red)2.046210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.969620.362

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.38470.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.426740.096
Manapal/WT (break)2.694410.381
Manapal/WT (red)5.10040.137