Expression of 1-1-7.4.9.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1955 | 0.414 |
27DAP/17DAP | 1.0362 | 0.92 |
39DAP/27DAP | 0.98421 | 0.719 |
41DAP/39DAP | 0.78596 | 0.503 |
42DAP/41DAP | 1.52825 | 0.696 |
43DAP/42DAP | 0.88013 | 0.705 |
47DAP/43DAP | 1.36873 | 0.463 |
52DAP/47DAP | 0.97137 | 0.842 |
57DAP/52DAP | 1.21911 | 0.972 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95452 | 0.379 |
17DAP/reference | 1.22981 | 0.014 |
27DAP/reference | 1.01829 | 0.782 |
39DAP/reference | 1.11093 | 0.144 |
41DAP/reference | 1.2272 | 0.014 |
42DAP/reference | 0.89224 | 0.054 |
43DAP/reference | 1.04866 | 0.569 |
47DAP/reference | 0.96007 | 0.322 |
52DAP/reference | 0.91329 | 0.21 |
57DAP/reference | 0.6875 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98968 | 0.801 |
27DAP/17DAP | 1.06764 | 0.794 |
39DAP/27DAP | 1.03019 | 0.623 |
41DAP/39DAP | 0.97387 | 0.861 |
42DAP/41DAP | 0.97535 | 0.774 |
43DAP/42DAP | 1.03929 | 0.413 |
47DAP/43DAP | 0.9431 | 0.637 |
52DAP/47DAP | 0.95029 | 0.857 |
57DAP/52DAP | 0.91237 | 0.221 |
57DAP/7DAP | 0.97712 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89991 | 0.108 |
17DAP/reference | 0.98899 | 0.518 |
27DAP/reference | 1.09514 | 0.551 |
39DAP/reference | 0.83495 | 0.043 |
41DAP/reference | 1.05071 | 1 |
42DAP/reference | 0.83882 | 0.023 |
43DAP/reference | 0.90592 | 0.192 |
47DAP/reference | 0.9492 | 0.383 |
52DAP/reference | 0.86152 | 0.097 |
57DAP/reference | 0.9637 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08498 | 0.605 |
17DAP/reference | 1.07809 | 0.406 |
27DAP/reference | 0.83656 | 0.212 |
39DAP/reference | 0.82616 | 0.11 |
41DAP/reference | 0.94331 | 0.291 |
42DAP/reference | 0.76236 | 0.012 |
43DAP/reference | 1.06846 | 0.575 |
47DAP/reference | 0.84767 | 0.017 |
52DAP/reference | 1.07483 | 0.988 |
57DAP/reference | 1.19945 | 0.306 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08832 | 0.723 |
17DAP/reference | 0.95828 | 0.537 |
27DAP/reference | 1.09335 | 0.531 |
39DAP/reference | 0.98738 | 0.693 |
41DAP/reference | 0.96359 | 0.512 |
42DAP/reference | 0.89514 | 0.361 |
43DAP/reference | 0.77711 | 0.102 |
47DAP/reference | 1.07232 | 0.48 |
52DAP/reference | 1.18553 | 0.42 |
57DAP/reference | 0.68178 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17828 | 0.966 |
26DAP/20DAP | 0.9958 | 1 |
34DAP/26DAP | 0.9774 | 0.945 |
51DAP/34DAP | 0.97567 | 0.791 |
52DAP/51DAP | 0.9268 | 1 |
53DAP/52DAP | 1.12692 | 0.24 |
55DAP/53DAP | 1.01424 | 1 |
57DAP/55DAP | 1.37409 | 0.063 |
62DAP/57DAP | 0.93395 | 0.871 |
68DAP/62DAP | 0.71903 | 0.211 |
68DAP/14DAP | 0.52565 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88612 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7411 | 0.276 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.22027 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.57553 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.65513 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.36211 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.04597 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.87374 | 0.341 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97944 | 1 |
DC3000/delta hrp 6h | 1.98463 | 0.95 |
DC3000/delta hrp 12h | 0.98047 | 1 |
DC3000/delta hrp 24h | 1.14593 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09858 | 0.057 |
DC3000 delta B/DC3000 delta AB | 1.09483 | 0.437 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05289 | 0.254 |
Exp 36h | 1.26481 | 1 |
Exp 60h | 1.28437 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00031 | 1 |
Var 0h | 0.89248 | 1 |
Var 12h I row2-row1 | 1.22261 | 0.22 |
Var 12h NI row2-row1 | 0.92367 | 0.82 |
Var 36h I row2-row1 | 0.7669 | 0.805 |
Var 36h NI row2-row1 | 0.99999 | 1 |
Var 60h I row2-row1 | 1.28534 | 0.562 |
Var 60h NI row2-row1 | 1.22657 | 0.904 |
Time course 0hI-0hNI | 1.09073 | 0.799 |
Time course 12hI-12hNI | 1.02189 | 0.82 |
Time course 36hI-36hNI | 1.01104 | 1 |
Time course 60hI-60hNI | 1.69 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02607 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.99345 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00066 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00162 | 0.958 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.15168 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.88989 | 1 |
Manapal/WT (red) | 1.19821 | 1 |
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