Expression of 1-1-7.4.9.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.19550.414
27DAP/17DAP1.03620.92
39DAP/27DAP0.984210.719
41DAP/39DAP0.785960.503
42DAP/41DAP1.528250.696
43DAP/42DAP0.880130.705
47DAP/43DAP1.368730.463
52DAP/47DAP0.971370.842
57DAP/52DAP1.219110.972

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.954520.379
17DAP/reference1.229810.014
27DAP/reference1.018290.782
39DAP/reference1.110930.144
41DAP/reference1.22720.014
42DAP/reference0.892240.054
43DAP/reference1.048660.569
47DAP/reference0.960070.322
52DAP/reference0.913290.21
57DAP/reference0.68750.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.989680.801
27DAP/17DAP1.067640.794
39DAP/27DAP1.030190.623
41DAP/39DAP0.973870.861
42DAP/41DAP0.975350.774
43DAP/42DAP1.039290.413
47DAP/43DAP0.94310.637
52DAP/47DAP0.950290.857
57DAP/52DAP0.912370.221
57DAP/7DAP0.977121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899910.108
17DAP/reference0.988990.518
27DAP/reference1.095140.551
39DAP/reference0.834950.043
41DAP/reference1.050711
42DAP/reference0.838820.023
43DAP/reference0.905920.192
47DAP/reference0.94920.383
52DAP/reference0.861520.097
57DAP/reference0.96370.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084980.605
17DAP/reference1.078090.406
27DAP/reference0.836560.212
39DAP/reference0.826160.11
41DAP/reference0.943310.291
42DAP/reference0.762360.012
43DAP/reference1.068460.575
47DAP/reference0.847670.017
52DAP/reference1.074830.988
57DAP/reference1.199450.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.088320.723
17DAP/reference0.958280.537
27DAP/reference1.093350.531
39DAP/reference0.987380.693
41DAP/reference0.963590.512
42DAP/reference0.895140.361
43DAP/reference0.777110.102
47DAP/reference1.072320.48
52DAP/reference1.185530.42
57DAP/reference0.681780.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.178280.966
26DAP/20DAP0.99581
34DAP/26DAP0.97740.945
51DAP/34DAP0.975670.791
52DAP/51DAP0.92681
53DAP/52DAP1.126920.24
55DAP/53DAP1.014241
57DAP/55DAP1.374090.063
62DAP/57DAP0.933950.871
68DAP/62DAP0.719030.211
68DAP/14DAP0.525650.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.886120.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.74110.276
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.22027
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.57553

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.65513
12-2/M82N/AN/A
12-4/M821.36211
1-3/M82N/AN/A
2-1-1/M821.04597
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.873740.341

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.979441
DC3000/delta hrp 6h1.984630.95
DC3000/delta hrp 12h0.980471
DC3000/delta hrp 24h1.145930.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.098580.057
DC3000 delta B/DC3000 delta AB1.094830.437

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.052890.254
Exp 36h1.264811
Exp 60h1.284370.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000311
Var 0h0.892481
Var 12h I row2-row11.222610.22
Var 12h NI row2-row10.923670.82
Var 36h I row2-row10.76690.805
Var 36h NI row2-row10.999991
Var 60h I row2-row11.285340.562
Var 60h NI row2-row11.226570.904
Time course 0hI-0hNI1.090730.799
Time course 12hI-12hNI1.021890.82
Time course 36hI-36hNI1.011041
Time course 60hI-60hNI1.690.096

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.026070.798
transgenic ySAMdc/azygous control (breaker)0.993451
transgenic ySAMdc/azygous control (red)1.000661

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.001620.958

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.151681

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.889891
Manapal/WT (red)1.198211