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Expression of 1-1-7.4.9.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986960.811
27DAP/17DAP1.022321
39DAP/27DAP1.081730.816
41DAP/39DAP1.018850.962
42DAP/41DAP1.096840.873
43DAP/42DAP1.006880.937
47DAP/43DAP0.959670.825
52DAP/47DAP0.96970.854
57DAP/52DAP1.000790.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.070530.334
17DAP/reference1.043890.606
27DAP/reference1.371620.045
39DAP/reference1.32670.059
41DAP/reference1.37690.036
42DAP/reference1.007760.755
43DAP/reference1.060810.425
47DAP/reference0.980590.473
52DAP/reference1.036991
57DAP/reference1.1860.153

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958470.484
27DAP/17DAP1.000841
39DAP/27DAP0.975930.721
41DAP/39DAP1.067160.69
42DAP/41DAP0.997310.892
43DAP/42DAP1.027240.351
47DAP/43DAP1.000551
52DAP/47DAP0.974990.917
57DAP/52DAP1.01060.997
57DAP/7DAP1.044160.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.773990.078
17DAP/reference0.776180.014
27DAP/reference1.145190.197
39DAP/reference0.710020.011
41DAP/reference0.773790.016
42DAP/reference0.965090.355
43DAP/reference0.954740.305
47DAP/reference0.917230.504
52DAP/reference0.933970.254
57DAP/reference0.982390.513

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108710.254
17DAP/reference1.13730.022
27DAP/reference1.108680.488
39DAP/reference0.967760.428
41DAP/reference1.035190.846
42DAP/reference1.238320.061
43DAP/reference1.928340.011
47DAP/reference1.352460.019
52DAP/reference1.077380.368
57DAP/reference1.073240.324

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883390.068
17DAP/reference1.000370.839
27DAP/reference0.955670.27
39DAP/reference1.047910.466
41DAP/reference0.997460.754
42DAP/reference1.077630.3
43DAP/reference1.08160.418
47DAP/reference1.206980.155
52DAP/reference1.242330.369
57DAP/reference1.183770.121

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.17140.265
26DAP/20DAP0.941030.512
34DAP/26DAP1.046030.819
51DAP/34DAP1.06830.654
52DAP/51DAP0.994861
53DAP/52DAP0.89948N/A
55DAP/53DAP0.99904N/A
57DAP/55DAP0.935290.718
62DAP/57DAP0.979540.994
68DAP/62DAP1.124650.84
68DAP/14DAP1.11470.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.084620.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.016540.752
Immature Eggplant/Mature Eggplant1.58593N/A
Ripe Pepper/Ripe Tomato0.798431
Mature Eggplant/Ripe Tomato0.694791

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.94530.961
1-1-2/M821.124221
12-2/M821.035971
12-4/M820.9891
1-3/M821.055211
2-1-1/M820.72274N/A
2-1/M82N/AN/A
2-6/M820.96487N/A
3-2/M820.938270.752
4-1-1/M821.352021
4-1/M821.097161
4-3-2/M820.928581
4-3/M821.65817N/A
5-3/M820.788150.642
6-2/M821.13673N/A
6-3/M82N/AN/A
7-1/M820.979741
7-2/M821.099121
9-3-2/M820.897541

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.026890.277
IL2-6/WTpooled1.102920.584
IL7-5/WTpooled0.933751
IL7-3/WTpooled0.990251
IL12-4/WTpooled0.957470.71
IL1-4/WTpooled1.128111
WT/WTpooled1.005211

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.345451

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.944711
DC3000/delta hrp 6h1.189831
DC3000/delta hrp 12h0.991031
DC3000/delta hrp 24h0.920330.298

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.377870.141

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.179331
Exp 36h1.293110.489
Exp 60h1.294990.226

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988691
Var 0h1.106461
Var 12h I row2-row11.051110.613
Var 12h NI row2-row10.919060.627
Var 36h I row2-row10.96561
Var 36h NI row2-row12.441711
Var 60h I row2-row10.967430.952
Var 60h NI row2-row11.007041
Time course 0hI-0hNI1.015490.867
Time course 12hI-12hNI1.047110.65
Time course 36hI-36hNI1.067650.355
Time course 60hI-60hNI1.482080.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.0261
transgenic ySAMdc/azygous control (breaker)0.210130.119
transgenic ySAMdc/azygous control (red)2.318580.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.04430.135

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.36120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)5.541440.083
Manapal/WT (break)10.25250.183
Manapal/WT (red)2.107210.164