Expression of 1-1-7.4.9.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98696 | 0.811 |
27DAP/17DAP | 1.02232 | 1 |
39DAP/27DAP | 1.08173 | 0.816 |
41DAP/39DAP | 1.01885 | 0.962 |
42DAP/41DAP | 1.09684 | 0.873 |
43DAP/42DAP | 1.00688 | 0.937 |
47DAP/43DAP | 0.95967 | 0.825 |
52DAP/47DAP | 0.9697 | 0.854 |
57DAP/52DAP | 1.00079 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07053 | 0.334 |
17DAP/reference | 1.04389 | 0.606 |
27DAP/reference | 1.37162 | 0.045 |
39DAP/reference | 1.3267 | 0.059 |
41DAP/reference | 1.3769 | 0.036 |
42DAP/reference | 1.00776 | 0.755 |
43DAP/reference | 1.06081 | 0.425 |
47DAP/reference | 0.98059 | 0.473 |
52DAP/reference | 1.03699 | 1 |
57DAP/reference | 1.186 | 0.153 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95847 | 0.484 |
27DAP/17DAP | 1.00084 | 1 |
39DAP/27DAP | 0.97593 | 0.721 |
41DAP/39DAP | 1.06716 | 0.69 |
42DAP/41DAP | 0.99731 | 0.892 |
43DAP/42DAP | 1.02724 | 0.351 |
47DAP/43DAP | 1.00055 | 1 |
52DAP/47DAP | 0.97499 | 0.917 |
57DAP/52DAP | 1.0106 | 0.997 |
57DAP/7DAP | 1.04416 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77399 | 0.078 |
17DAP/reference | 0.77618 | 0.014 |
27DAP/reference | 1.14519 | 0.197 |
39DAP/reference | 0.71002 | 0.011 |
41DAP/reference | 0.77379 | 0.016 |
42DAP/reference | 0.96509 | 0.355 |
43DAP/reference | 0.95474 | 0.305 |
47DAP/reference | 0.91723 | 0.504 |
52DAP/reference | 0.93397 | 0.254 |
57DAP/reference | 0.98239 | 0.513 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10871 | 0.254 |
17DAP/reference | 1.1373 | 0.022 |
27DAP/reference | 1.10868 | 0.488 |
39DAP/reference | 0.96776 | 0.428 |
41DAP/reference | 1.03519 | 0.846 |
42DAP/reference | 1.23832 | 0.061 |
43DAP/reference | 1.92834 | 0.011 |
47DAP/reference | 1.35246 | 0.019 |
52DAP/reference | 1.07738 | 0.368 |
57DAP/reference | 1.07324 | 0.324 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88339 | 0.068 |
17DAP/reference | 1.00037 | 0.839 |
27DAP/reference | 0.95567 | 0.27 |
39DAP/reference | 1.04791 | 0.466 |
41DAP/reference | 0.99746 | 0.754 |
42DAP/reference | 1.07763 | 0.3 |
43DAP/reference | 1.0816 | 0.418 |
47DAP/reference | 1.20698 | 0.155 |
52DAP/reference | 1.24233 | 0.369 |
57DAP/reference | 1.18377 | 0.121 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1714 | 0.265 |
26DAP/20DAP | 0.94103 | 0.512 |
34DAP/26DAP | 1.04603 | 0.819 |
51DAP/34DAP | 1.0683 | 0.654 |
52DAP/51DAP | 0.99486 | 1 |
53DAP/52DAP | 0.89948 | |
55DAP/53DAP | 0.99904 | |
57DAP/55DAP | 0.93529 | 0.718 |
62DAP/57DAP | 0.97954 | 0.994 |
68DAP/62DAP | 1.12465 | 0.84 |
68DAP/14DAP | 1.1147 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08462 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.01654 | 0.752 |
Immature Eggplant/Mature Eggplant | 1.58593 | |
Ripe Pepper/Ripe Tomato | 0.79843 | 1 |
Mature Eggplant/Ripe Tomato | 0.69479 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9453 | 0.961 |
1-1-2/M82 | 1.12422 | 1 |
12-2/M82 | 1.03597 | 1 |
12-4/M82 | 0.989 | 1 |
1-3/M82 | 1.05521 | 1 |
2-1-1/M82 | 0.72274 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.96487 | |
3-2/M82 | 0.93827 | 0.752 |
4-1-1/M82 | 1.35202 | 1 |
4-1/M82 | 1.09716 | 1 |
4-3-2/M82 | 0.92858 | 1 |
4-3/M82 | 1.65817 | |
5-3/M82 | 0.78815 | 0.642 |
6-2/M82 | 1.13673 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.97974 | 1 |
7-2/M82 | 1.09912 | 1 |
9-3-2/M82 | 0.89754 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02689 | 0.277 |
IL2-6/WTpooled | 1.10292 | 0.584 |
IL7-5/WTpooled | 0.93375 | 1 |
IL7-3/WTpooled | 0.99025 | 1 |
IL12-4/WTpooled | 0.95747 | 0.71 |
IL1-4/WTpooled | 1.12811 | 1 |
WT/WTpooled | 1.00521 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.34545 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94471 | 1 |
DC3000/delta hrp 6h | 1.18983 | 1 |
DC3000/delta hrp 12h | 0.99103 | 1 |
DC3000/delta hrp 24h | 0.92033 | 0.298 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.37787 | 0.141 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.17933 | 1 |
Exp 36h | 1.29311 | 0.489 |
Exp 60h | 1.29499 | 0.226 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98869 | 1 |
Var 0h | 1.10646 | 1 |
Var 12h I row2-row1 | 1.05111 | 0.613 |
Var 12h NI row2-row1 | 0.91906 | 0.627 |
Var 36h I row2-row1 | 0.9656 | 1 |
Var 36h NI row2-row1 | 2.44171 | 1 |
Var 60h I row2-row1 | 0.96743 | 0.952 |
Var 60h NI row2-row1 | 1.00704 | 1 |
Time course 0hI-0hNI | 1.01549 | 0.867 |
Time course 12hI-12hNI | 1.04711 | 0.65 |
Time course 36hI-36hNI | 1.06765 | 0.355 |
Time course 60hI-60hNI | 1.48208 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.026 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.21013 | 0.119 |
transgenic ySAMdc/azygous control (red) | 2.31858 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.0443 | 0.135 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.3612 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 5.54144 | 0.083 |
Manapal/WT (break) | 10.2525 | 0.183 |
Manapal/WT (red) | 2.10721 | 0.164 |
|
|