Expression of 1-1-7.4.9.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.206460.545
27DAP/17DAP1.151430.859
39DAP/27DAP1.394420.268
41DAP/39DAP0.696870.066
42DAP/41DAP1.134510.941
43DAP/42DAP1.12640.985
47DAP/43DAP0.878460.599
52DAP/47DAP1.125560.861
57DAP/52DAP0.920240.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.23750.421
17DAP/reference1.11970.675
27DAP/reference1.378270.106
39DAP/reference1.405220.125
41DAP/reference1.059440.963
42DAP/reference1.47290.001
43DAP/reference1.454410.01
47DAP/reference1.842070.001
52DAP/reference1.37070.096
57DAP/reference1.585760.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.045460.699
27DAP/17DAP1.028010.909
39DAP/27DAP1.001851
41DAP/39DAP1.085330.88
42DAP/41DAP1.004630.892
43DAP/42DAP0.97240.576
47DAP/43DAP0.948970.559
52DAP/47DAP1.008231
57DAP/52DAP0.932520.511
57DAP/7DAP1.07981

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.444650.126
17DAP/reference1.424790.016
27DAP/reference1.209680.197
39DAP/reference1.429070.006
41DAP/reference1.818260.01
42DAP/reference1.549140.012
43DAP/reference1.510640.008
47DAP/reference1.743950.014
52DAP/reference1.577820.052
57DAP/reference1.385960.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923060.441
17DAP/reference1.140540.243
27DAP/reference1.144810.629
39DAP/reference1.14830.346
41DAP/reference1.533320.005
42DAP/reference1.033090.951
43DAP/reference1.047060.761
47DAP/reference1.688940.008
52DAP/reference0.854650.111
57DAP/reference0.797890.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.639650.023
17DAP/reference1.170850.531
27DAP/reference1.03680.871
39DAP/reference1.349530.011
41DAP/reference1.154990.231
42DAP/reference1.508550.024
43DAP/reference1.739850.018
47DAP/reference1.403340.027
52DAP/reference1.877460.033
57DAP/reference2.057150.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.361060.878
26DAP/20DAP1.218980.297
34DAP/26DAP0.997981
51DAP/34DAP1.146520.416
52DAP/51DAP0.814130.151
53DAP/52DAP1.030490.901
55DAP/53DAP0.854170.046
57DAP/55DAP1.08760.87
62DAP/57DAP0.934650.681
68DAP/62DAP0.858150.543
68DAP/14DAP0.882591

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.749590.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.239230.075
Mature Green Tomato/Ripe Tomato1.378210.022
Immature Eggplant/Mature Eggplant1.031860.58
Ripe Pepper/Ripe Tomato0.975591
Mature Eggplant/Ripe Tomato0.95521

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.873160.841
1-1-2/M821.262171
12-2/M820.875330.678
12-4/M821.058261
1-3/M822.291840.277
2-1-1/M821.190470.689
2-1/M820.92290.519
2-6/M821.014971
3-2/M821.276480.549
4-1-1/M821.089411
4-1/M821.523640.853
4-3-2/M821.236820.284
4-3/M821.043051
5-3/M821.108691
6-2/M821.152271
6-3/M821.11171
7-1/M820.983081
7-2/M821.521880.385
9-3-2/M821.091051

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.962541
IL2-6/WTpooled1.070540.788
IL7-5/WTpooled0.888621
IL7-3/WTpooled1.342750.362
IL12-4/WTpooled1.129290.538
IL1-4/WTpooled1.045431
WT/WTpooled0.966711

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.387580.148

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947411
DC3000/delta hrp 6h1.082421
DC3000/delta hrp 12h0.92121
DC3000/delta hrp 24h1.030280.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.90751
DC3000 delta B/DC3000 delta AB1.237770.169

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.062071
Exp 36h1.016281
Exp 60h1.132431

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024711
Var 0h0.666681
Var 12h I row2-row10.892670.338
Var 12h NI row2-row10.933080.82
Var 36h I row2-row11.146450.489
Var 36h NI row2-row11.126561
Var 60h I row2-row10.83360.374
Var 60h NI row2-row10.880120.572
Time course 0hI-0hNI1.021820.833
Time course 12hI-12hNI1.028570.774
Time course 36hI-36hNI1.170580.147
Time course 60hI-60hNI2.106030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.026871
transgenic ySAMdc/azygous control (breaker)1.063091
transgenic ySAMdc/azygous control (red)1.159240.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.840720.133

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.690990.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.881171
Manapal/WT (break)0.952381
Manapal/WT (red)0.974480.728