Expression of 1-1-8.1.1.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79329 | 0.211 |
27DAP/17DAP | 0.80501 | 0.478 |
39DAP/27DAP | 1.79625 | 0.056 |
41DAP/39DAP | 0.61212 | 0.06 |
42DAP/41DAP | 1.23769 | 0.745 |
43DAP/42DAP | 0.79146 | 0.454 |
47DAP/43DAP | 0.94312 | 0.724 |
52DAP/47DAP | 0.82939 | 0.548 |
57DAP/52DAP | 1.08105 | 0.95 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.6812 | 0.028 |
17DAP/reference | 1.13147 | 0.631 |
27DAP/reference | 0.77527 | 0.068 |
39DAP/reference | 1.16752 | 0.413 |
41DAP/reference | 0.95688 | 0.542 |
42DAP/reference | 1.98156 | 0.001 |
43DAP/reference | 1.5248 | 0.01 |
47DAP/reference | 1.46602 | 0.001 |
52DAP/reference | 0.92563 | 0.3 |
57DAP/reference | 1.4049 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94765 | 0.509 |
27DAP/17DAP | 0.99691 | 0.969 |
39DAP/27DAP | 0.98005 | 0.925 |
41DAP/39DAP | 1.2964 | 0.719 |
42DAP/41DAP | 1.03035 | 0.999 |
43DAP/42DAP | 0.93575 | 0.308 |
47DAP/43DAP | 0.98349 | 0.93 |
52DAP/47DAP | 0.73184 | 0.072 |
57DAP/52DAP | 0.91289 | 0.551 |
57DAP/7DAP | 0.60485 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.50121 | 0.205 |
17DAP/reference | 1.1169 | 0.102 |
27DAP/reference | 0.77031 | 0.051 |
39DAP/reference | 0.85939 | 0.146 |
41DAP/reference | 0.991 | 0.589 |
42DAP/reference | 1.06144 | 0.686 |
43DAP/reference | 1.00212 | 0.665 |
47DAP/reference | 1.43256 | 0.318 |
52DAP/reference | 1.05107 | 1 |
57DAP/reference | 1.08445 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.61797 | 0.048 |
17DAP/reference | 1.50637 | 0.01 |
27DAP/reference | 1.85551 | 0.017 |
39DAP/reference | 1.61761 | 0.011 |
41DAP/reference | 1.79248 | 0.005 |
42DAP/reference | 1.93508 | 0.008 |
43DAP/reference | 1.34479 | 0.509 |
47DAP/reference | 1.94193 | 0.008 |
52DAP/reference | 0.89097 | 0.156 |
57DAP/reference | 1.20386 | 0.672 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21762 | 0.631 |
17DAP/reference | 1.36402 | 0.306 |
27DAP/reference | 1.24041 | 0.312 |
39DAP/reference | 1.37922 | 0.026 |
41DAP/reference | 1.1966 | 0.714 |
42DAP/reference | 1.60594 | |
43DAP/reference | 3.62241 | 0.064 |
47DAP/reference | 1.36177 | 0.063 |
52DAP/reference | 1.65968 | 0.098 |
57DAP/reference | 2.28756 | 0.011 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9659 | 1 |
26DAP/20DAP | 2.39964 | 0.097 |
34DAP/26DAP | 0.98924 | 0.991 |
51DAP/34DAP | 0.64949 | 0.06 |
52DAP/51DAP | 0.94953 | 1 |
53DAP/52DAP | 0.84941 | 0.111 |
55DAP/53DAP | 0.54576 | 0.017 |
57DAP/55DAP | 1.97361 | 0.048 |
62DAP/57DAP | 1.89744 | 0.185 |
68DAP/62DAP | 1.24055 | 0.345 |
68DAP/14DAP | 0.9377 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.57826 | 0.025 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77928 | 0.23 |
Mature Green Tomato/Ripe Tomato | 1.32424 | 0.044 |
Immature Eggplant/Mature Eggplant | 1.24341 | 0.116 |
Ripe Pepper/Ripe Tomato | 1.11484 | 1 |
Mature Eggplant/Ripe Tomato | 0.95181 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99082 | 1 |
1-1-2/M82 | 1.16958 | 0.977 |
12-2/M82 | 1.07893 | 1 |
12-4/M82 | 1.08497 | 1 |
1-3/M82 | 1.40467 | 0.255 |
2-1-1/M82 | 0.99581 | 1 |
2-1/M82 | 0.60129 | 0.322 |
2-6/M82 | 0.96911 | 1 |
3-2/M82 | 0.90552 | |
4-1-1/M82 | 1.04754 | 1 |
4-1/M82 | 1.17147 | 0.853 |
4-3-2/M82 | 1.75131 | 0.241 |
4-3/M82 | 1.14892 | 1 |
5-3/M82 | 1.04777 | 1 |
6-2/M82 | 0.9177 | 1 |
6-3/M82 | 1.11805 | 1 |
7-1/M82 | 0.99968 | 1 |
7-2/M82 | 0.97767 | 1 |
9-3-2/M82 | 1.23257 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.1054 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.33255 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05944 | 0.914 |
DC3000/delta hrp 6h | 0.90593 | 0.95 |
DC3000/delta hrp 12h | 0.97425 | 1 |
DC3000/delta hrp 24h | 1.19469 | 0.079 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12929 | 0.183 |
DC3000 delta B/DC3000 delta AB | 1.16684 | 0.225 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98328 | 1 |
Exp 36h | 1.50326 | 1 |
Exp 60h | 1.10742 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98766 | 1 |
Var 0h | 1.38405 | 0.936 |
Var 12h I row2-row1 | 1.07526 | 1 |
Var 12h NI row2-row1 | 1.13343 | 1 |
Var 36h I row2-row1 | 1.16361 | 0.489 |
Var 36h NI row2-row1 | 0.85587 | 0.61 |
Var 60h I row2-row1 | 0.95476 | 0.952 |
Var 60h NI row2-row1 | 0.69999 | 0.292 |
Time course 0hI-0hNI | 0.8199 | 0.051 |
Time course 12hI-12hNI | 1.08834 | 0.512 |
Time course 36hI-36hNI | 1.3513 | 0.147 |
Time course 60hI-60hNI | 1.54691 | 0.025 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00734 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.55511 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.24757 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11299 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.67878 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03347 | 1 |
Manapal/WT (break) | 1.08045 | 0.183 |
Manapal/WT (red) | 1.61327 | 0.164 |
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