Expression of 1-1-8.1.10.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78096 | 0.178 |
27DAP/17DAP | 1.15689 | 0.849 |
39DAP/27DAP | 1.11791 | 0.985 |
41DAP/39DAP | 1.33101 | 0.426 |
42DAP/41DAP | 1.13936 | 0.825 |
43DAP/42DAP | 0.737 | 0.561 |
47DAP/43DAP | 1.12515 | 0.42 |
52DAP/47DAP | 1.29868 | 0.462 |
57DAP/52DAP | 1.3388 | 0.826 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07634 | 1 |
17DAP/reference | 1.02606 | 0.74 |
27DAP/reference | 1.0219 | 0.797 |
39DAP/reference | 1.23629 | 0.032 |
41DAP/reference | 1.21523 | 0.079 |
42DAP/reference | 1.00411 | 0.547 |
43DAP/reference | 1.05537 | 0.705 |
47DAP/reference | 0.97902 | 0.392 |
52DAP/reference | 0.67473 | 0.025 |
57DAP/reference | 0.82096 | 0.047 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92763 | 0.454 |
27DAP/17DAP | 1.03347 | 0.915 |
39DAP/27DAP | 0.82756 | 0.256 |
41DAP/39DAP | 0.91938 | 0.446 |
42DAP/41DAP | 1.05297 | 0.886 |
43DAP/42DAP | 1.44539 | 0.017 |
47DAP/43DAP | 0.87336 | 0.247 |
52DAP/47DAP | 0.8031 | 0.076 |
57DAP/52DAP | 0.82322 | 0.219 |
57DAP/7DAP | 1.37623 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81651 | 0.203 |
17DAP/reference | 0.88934 | 0.124 |
27DAP/reference | 1.42331 | 0.01 |
39DAP/reference | 0.69068 | 0.025 |
41DAP/reference | 0.79895 | 0.046 |
42DAP/reference | 0.83323 | 0.178 |
43DAP/reference | 0.72936 | 0.023 |
47DAP/reference | 0.81949 | 0.128 |
52DAP/reference | 0.76482 | 0.01 |
57DAP/reference | 0.65972 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24498 | 0.36 |
17DAP/reference | 1.2278 | 0.021 |
27DAP/reference | 1.37915 | 0.072 |
39DAP/reference | 1.06965 | 0.806 |
41DAP/reference | 1.10299 | 0.688 |
42DAP/reference | 1.23354 | 0.649 |
43DAP/reference | 2.23906 | 0.038 |
47DAP/reference | 1.60366 | 0.011 |
52DAP/reference | 1.21704 | 0.343 |
57DAP/reference | 1.23363 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90804 | 0.29 |
17DAP/reference | 0.93613 | 0.444 |
27DAP/reference | 0.89887 | 0.078 |
39DAP/reference | 0.84414 | 0.246 |
41DAP/reference | 1.27055 | 0.06 |
42DAP/reference | 1.2286 | 0.065 |
43DAP/reference | 0.81879 | 0.098 |
47DAP/reference | 1.02699 | 0.877 |
52DAP/reference | 1.30768 | 0.091 |
57DAP/reference | 1.90541 | 0.892 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09364 | 1 |
26DAP/20DAP | 1.93356 | 0.111 |
34DAP/26DAP | 1.0547 | 1 |
51DAP/34DAP | 1.4575 | 0.04 |
52DAP/51DAP | 1.19047 | 0.467 |
53DAP/52DAP | 0.59469 | 0.049 |
55DAP/53DAP | 0.70435 | 0.091 |
57DAP/55DAP | 1.16606 | 0.986 |
62DAP/57DAP | 0.80053 | 0.162 |
68DAP/62DAP | 0.89675 | 0.7 |
68DAP/14DAP | 0.84765 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.53945 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.70287 | 0.19 |
Mature Green Tomato/Ripe Tomato | 1.13755 | 0.881 |
Immature Eggplant/Mature Eggplant | 0.95156 | 0.808 |
Ripe Pepper/Ripe Tomato | 2.07525 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.89284 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05602 | 1 |
1-1-2/M82 | 1.16605 | 1 |
12-2/M82 | 4.14818 | 1 |
12-4/M82 | 1.06155 | 1 |
1-3/M82 | 0.94358 | 1 |
2-1-1/M82 | 0.92359 | 0.683 |
2-1/M82 | 0.77654 | 0.519 |
2-6/M82 | 0.82541 | 1 |
3-2/M82 | 1.36072 | |
4-1-1/M82 | 0.84808 | 0.667 |
4-1/M82 | 1.07395 | |
4-3-2/M82 | 1.37204 | |
4-3/M82 | 1.07381 | 1 |
5-3/M82 | 1.05294 | 1 |
6-2/M82 | 0.96766 | 1 |
6-3/M82 | 1.10338 | 1 |
7-1/M82 | 1.07248 | 1 |
7-2/M82 | 0.82706 | 0.599 |
9-3-2/M82 | 0.96466 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09996 | 1 |
IL2-6/WTpooled | 1.12157 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.93793 | |
IL12-4/WTpooled | 0.52545 | |
IL1-4/WTpooled | 1.02151 | 1 |
WT/WTpooled | 0.83722 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0154 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.6573 | 0.921 |
DC3000/delta hrp 6h | 0.91192 | 0.95 |
DC3000/delta hrp 12h | 1.321 | 1 |
DC3000/delta hrp 24h | 1.09612 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24406 | |
DC3000 delta B/DC3000 delta AB | 0.78018 | 0.041 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90746 | 1 |
Exp 36h | 1.62793 | 0.693 |
Exp 60h | 0.90295 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05385 | 1 |
Var 0h | 1.008 | 1 |
Var 12h I row2-row1 | 1.10534 | 0.473 |
Var 12h NI row2-row1 | 1.01979 | 1 |
Var 36h I row2-row1 | 0.91479 | 0.438 |
Var 36h NI row2-row1 | 0.74339 | 0.852 |
Var 60h I row2-row1 | 0.95127 | 0.952 |
Var 60h NI row2-row1 | 1.26898 | 0.701 |
Time course 0hI-0hNI | 0.9783 | 0.927 |
Time course 12hI-12hNI | 1.16916 | 0.507 |
Time course 36hI-36hNI | 1.05151 | 0.316 |
Time course 60hI-60hNI | 1.03204 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98931 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.2836 | 1 |
transgenic ySAMdc/azygous control (red) | 1.15828 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01321 | 0.766 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.39912 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.24844 | 0.307 |
Manapal/WT (break) | 1.35525 | 1 |
Manapal/WT (red) | 0.9659 | 0.728 |
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