Expression of 1-1-8.1.10.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.780960.178
27DAP/17DAP1.156890.849
39DAP/27DAP1.117910.985
41DAP/39DAP1.331010.426
42DAP/41DAP1.139360.825
43DAP/42DAP0.7370.561
47DAP/43DAP1.125150.42
52DAP/47DAP1.298680.462
57DAP/52DAP1.33880.826

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.076341
17DAP/reference1.026060.74
27DAP/reference1.02190.797
39DAP/reference1.236290.032
41DAP/reference1.215230.079
42DAP/reference1.004110.547
43DAP/reference1.055370.705
47DAP/reference0.979020.392
52DAP/reference0.674730.025
57DAP/reference0.820960.047

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.927630.454
27DAP/17DAP1.033470.915
39DAP/27DAP0.827560.256
41DAP/39DAP0.919380.446
42DAP/41DAP1.052970.886
43DAP/42DAP1.445390.017
47DAP/43DAP0.873360.247
52DAP/47DAP0.80310.076
57DAP/52DAP0.823220.219
57DAP/7DAP1.376231

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.816510.203
17DAP/reference0.889340.124
27DAP/reference1.423310.01
39DAP/reference0.690680.025
41DAP/reference0.798950.046
42DAP/reference0.833230.178
43DAP/reference0.729360.023
47DAP/reference0.819490.128
52DAP/reference0.764820.01
57DAP/reference0.659720.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.244980.36
17DAP/reference1.22780.021
27DAP/reference1.379150.072
39DAP/reference1.069650.806
41DAP/reference1.102990.688
42DAP/reference1.233540.649
43DAP/reference2.239060.038
47DAP/reference1.603660.011
52DAP/reference1.217040.343
57DAP/reference1.233630.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908040.29
17DAP/reference0.936130.444
27DAP/reference0.898870.078
39DAP/reference0.844140.246
41DAP/reference1.270550.06
42DAP/reference1.22860.065
43DAP/reference0.818790.098
47DAP/reference1.026990.877
52DAP/reference1.307680.091
57DAP/reference1.905410.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.093641
26DAP/20DAP1.933560.111
34DAP/26DAP1.05471
51DAP/34DAP1.45750.04
52DAP/51DAP1.190470.467
53DAP/52DAP0.594690.049
55DAP/53DAP0.704350.091
57DAP/55DAP1.166060.986
62DAP/57DAP0.800530.162
68DAP/62DAP0.896750.7
68DAP/14DAP0.847651

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.539450.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.702870.19
Mature Green Tomato/Ripe Tomato1.137550.881
Immature Eggplant/Mature Eggplant0.951560.808
Ripe Pepper/Ripe Tomato2.075250.258
Mature Eggplant/Ripe Tomato0.892841

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.056021
1-1-2/M821.166051
12-2/M824.148181
12-4/M821.061551
1-3/M820.943581
2-1-1/M820.923590.683
2-1/M820.776540.519
2-6/M820.825411
3-2/M821.36072
4-1-1/M820.848080.667
4-1/M821.07395
4-3-2/M821.37204
4-3/M821.073811
5-3/M821.052941
6-2/M820.967661
6-3/M821.103381
7-1/M821.072481
7-2/M820.827060.599
9-3-2/M820.964661

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.099961
IL2-6/WTpooled1.121571
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.93793
IL12-4/WTpooled0.52545
IL1-4/WTpooled1.021511
WT/WTpooled0.837221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.01541

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.65730.921
DC3000/delta hrp 6h0.911920.95
DC3000/delta hrp 12h1.3211
DC3000/delta hrp 24h1.096120.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.24406
DC3000 delta B/DC3000 delta AB0.780180.041

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.907461
Exp 36h1.627930.693
Exp 60h0.902950.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.053851
Var 0h1.0081
Var 12h I row2-row11.105340.473
Var 12h NI row2-row11.019791
Var 36h I row2-row10.914790.438
Var 36h NI row2-row10.743390.852
Var 60h I row2-row10.951270.952
Var 60h NI row2-row11.268980.701
Time course 0hI-0hNI0.97830.927
Time course 12hI-12hNI1.169160.507
Time course 36hI-36hNI1.051510.316
Time course 60hI-60hNI1.032041

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.989310.862
transgenic ySAMdc/azygous control (breaker)1.28361
transgenic ySAMdc/azygous control (red)1.158280.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.013210.766

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.399120.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.248440.307
Manapal/WT (break)1.355251
Manapal/WT (red)0.96590.728