Expression of 1-1-8.1.10.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98764 | 0.801 |
27DAP/17DAP | 1.10179 | 0.881 |
39DAP/27DAP | 0.82861 | 0.447 |
41DAP/39DAP | 1.21197 | 0.676 |
42DAP/41DAP | 1.15944 | 1 |
43DAP/42DAP | 0.95743 | 0.906 |
47DAP/43DAP | 1.06238 | 0.769 |
52DAP/47DAP | 0.95525 | 0.821 |
57DAP/52DAP | 0.71292 | 0.687 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85264 | 0.07 |
17DAP/reference | 1.20778 | 0.044 |
27DAP/reference | 0.96382 | 0.525 |
39DAP/reference | 1.05795 | 0.639 |
41DAP/reference | 1.20379 | 0.122 |
42DAP/reference | 1.06721 | 0.756 |
43DAP/reference | 1.01098 | 0.942 |
47DAP/reference | 0.89105 | 0.106 |
52DAP/reference | 0.81096 | 0.069 |
57DAP/reference | 0.87813 | 0.074 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14954 | 0.525 |
27DAP/17DAP | 0.93379 | 0.821 |
39DAP/27DAP | 0.98967 | 0.859 |
41DAP/39DAP | 0.84374 | 0.093 |
42DAP/41DAP | 1.00316 | 0.924 |
43DAP/42DAP | 1.03066 | 0.788 |
47DAP/43DAP | 1.05595 | 0.772 |
52DAP/47DAP | 1.27661 | 0.444 |
57DAP/52DAP | 0.97848 | 0.742 |
57DAP/7DAP | 1.44475 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21287 | 0.15 |
17DAP/reference | 1.45631 | 0.006 |
27DAP/reference | 1.30687 | 0.023 |
39DAP/reference | 1.61782 | 0.005 |
41DAP/reference | 1.5984 | 0.008 |
42DAP/reference | 1.44576 | 0.132 |
43DAP/reference | 2.00755 | 0.006 |
47DAP/reference | 1.19557 | 0.493 |
52DAP/reference | 1.83599 | 0.007 |
57DAP/reference | 2.09056 | 0.003 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10628 | 0.443 |
17DAP/reference | 1.07912 | 0.979 |
27DAP/reference | 0.86773 | 0.203 |
39DAP/reference | 0.92913 | 0.221 |
41DAP/reference | 0.91455 | 0.291 |
42DAP/reference | 0.89403 | 0.237 |
43DAP/reference | 1.14505 | 0.874 |
47DAP/reference | 1.06397 | 0.556 |
52DAP/reference | 0.93683 | 0.469 |
57DAP/reference | 0.6407 | 0.107 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18353 | 0.069 |
17DAP/reference | 1.12364 | 0.436 |
27DAP/reference | 1.44108 | 0.023 |
39DAP/reference | 1.43218 | 0.02 |
41DAP/reference | 1.41559 | 0.01 |
42DAP/reference | 1.44146 | 0.027 |
43DAP/reference | 1.44584 | 0.092 |
47DAP/reference | 1.03198 | 0.687 |
52DAP/reference | 1.40162 | 0.083 |
57DAP/reference | 1.08643 | 0.892 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09003 | 0.966 |
26DAP/20DAP | 1.15864 | 0.471 |
34DAP/26DAP | 1.02164 | 1 |
51DAP/34DAP | 1.34773 | 0.962 |
52DAP/51DAP | 0.92748 | 1 |
53DAP/52DAP | 1.02153 | 0.998 |
55DAP/53DAP | 0.985 | 0.894 |
57DAP/55DAP | 0.4806 | 0.039 |
62DAP/57DAP | 1.14711 | 1 |
68DAP/62DAP | 1.05881 | 1 |
68DAP/14DAP | 0.65608 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14847 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 5.27278 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.83113 | |
Immature Eggplant/Mature Eggplant | 0.40168 | |
Ripe Pepper/Ripe Tomato | 0.17188 | |
Mature Eggplant/Ripe Tomato | 1.15561 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08904 | 0.877 |
1-1-2/M82 | 0.97607 | 1 |
12-2/M82 | 1.01161 | 1 |
12-4/M82 | 0.96771 | 1 |
1-3/M82 | 1.07595 | 1 |
2-1-1/M82 | 1.13981 | 0.439 |
2-1/M82 | 1.08763 | 1 |
2-6/M82 | 1.01029 | 1 |
3-2/M82 | 0.93489 | |
4-1-1/M82 | 0.90958 | 1 |
4-1/M82 | 0.98563 | |
4-3-2/M82 | 1.18989 | |
4-3/M82 | 0.98524 | 1 |
5-3/M82 | 0.99927 | 1 |
6-2/M82 | 1.04982 | 1 |
6-3/M82 | 1.04349 | 1 |
7-1/M82 | 0.97653 | 0.803 |
7-2/M82 | 1.00135 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.7189 | |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.88562 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.85306 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97541 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.99064 | 1 |
DC3000/delta hrp 24h | 1.02914 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.7089 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95967 | 1 |
Var 0h | 0.87166 | 1 |
Var 12h I row2-row1 | 1.98427 | 0.58 |
Var 12h NI row2-row1 | 1.03958 | 1 |
Var 36h I row2-row1 | 0.99267 | 1 |
Var 36h NI row2-row1 | 0.9747 | 0.852 |
Var 60h I row2-row1 | 0.9895 | 1 |
Var 60h NI row2-row1 | 0.98554 | 1 |
Time course 0hI-0hNI | 1.10284 | 0.764 |
Time course 12hI-12hNI | 0.9168 | 0.119 |
Time course 36hI-36hNI | 0.84708 | 0.078 |
Time course 60hI-60hNI | 0.51619 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.67144 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.89992 | 1 |
transgenic ySAMdc/azygous control (red) | 1.36329 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94447 | 0.128 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.55484 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88197 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.86142 | 0.181 |
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