Expression of 1-1-8.1.10.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.987640.801
27DAP/17DAP1.101790.881
39DAP/27DAP0.828610.447
41DAP/39DAP1.211970.676
42DAP/41DAP1.159441
43DAP/42DAP0.957430.906
47DAP/43DAP1.062380.769
52DAP/47DAP0.955250.821
57DAP/52DAP0.712920.687

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.852640.07
17DAP/reference1.207780.044
27DAP/reference0.963820.525
39DAP/reference1.057950.639
41DAP/reference1.203790.122
42DAP/reference1.067210.756
43DAP/reference1.010980.942
47DAP/reference0.891050.106
52DAP/reference0.810960.069
57DAP/reference0.878130.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.149540.525
27DAP/17DAP0.933790.821
39DAP/27DAP0.989670.859
41DAP/39DAP0.843740.093
42DAP/41DAP1.003160.924
43DAP/42DAP1.030660.788
47DAP/43DAP1.055950.772
52DAP/47DAP1.276610.444
57DAP/52DAP0.978480.742
57DAP/7DAP1.444750.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.212870.15
17DAP/reference1.456310.006
27DAP/reference1.306870.023
39DAP/reference1.617820.005
41DAP/reference1.59840.008
42DAP/reference1.445760.132
43DAP/reference2.007550.006
47DAP/reference1.195570.493
52DAP/reference1.835990.007
57DAP/reference2.090560.003

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.106280.443
17DAP/reference1.079120.979
27DAP/reference0.867730.203
39DAP/reference0.929130.221
41DAP/reference0.914550.291
42DAP/reference0.894030.237
43DAP/reference1.145050.874
47DAP/reference1.063970.556
52DAP/reference0.936830.469
57DAP/reference0.64070.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.183530.069
17DAP/reference1.123640.436
27DAP/reference1.441080.023
39DAP/reference1.432180.02
41DAP/reference1.415590.01
42DAP/reference1.441460.027
43DAP/reference1.445840.092
47DAP/reference1.031980.687
52DAP/reference1.401620.083
57DAP/reference1.086430.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.090030.966
26DAP/20DAP1.158640.471
34DAP/26DAP1.021641
51DAP/34DAP1.347730.962
52DAP/51DAP0.927481
53DAP/52DAP1.021530.998
55DAP/53DAP0.9850.894
57DAP/55DAP0.48060.039
62DAP/57DAP1.147111
68DAP/62DAP1.058811
68DAP/14DAP0.656080.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.148470.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.272780.058
Mature Green Tomato/Ripe Tomato0.83113
Immature Eggplant/Mature Eggplant0.40168
Ripe Pepper/Ripe Tomato0.17188
Mature Eggplant/Ripe Tomato1.155611

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.089040.877
1-1-2/M820.976071
12-2/M821.011611
12-4/M820.967711
1-3/M821.075951
2-1-1/M821.139810.439
2-1/M821.087631
2-6/M821.010291
3-2/M820.93489
4-1-1/M820.909581
4-1/M820.98563
4-3-2/M821.18989
4-3/M820.985241
5-3/M820.999271
6-2/M821.049821
6-3/M821.043491
7-1/M820.976530.803
7-2/M821.001351
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.7189
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.88562
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.853060.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.975411
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.990641
DC3000/delta hrp 24h1.029140.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.7089

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.959671
Var 0h0.871661
Var 12h I row2-row11.984270.58
Var 12h NI row2-row11.039581
Var 36h I row2-row10.992671
Var 36h NI row2-row10.97470.852
Var 60h I row2-row10.98951
Var 60h NI row2-row10.985541
Time course 0hI-0hNI1.102840.764
Time course 12hI-12hNI0.91680.119
Time course 36hI-36hNI0.847080.078
Time course 60hI-60hNI0.516190.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.671440.798
transgenic ySAMdc/azygous control (breaker)0.899921
transgenic ySAMdc/azygous control (red)1.363290.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.944470.128

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.554840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.881971
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.861420.181