Expression of 1-1-8.1.10.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.973010.617
27DAP/17DAP1.868590.424
39DAP/27DAP1.17920.759
41DAP/39DAP1.020270.939
42DAP/41DAP1.42350.232
43DAP/42DAP1.107630.974
47DAP/43DAP1.305160.444
52DAP/47DAP1.677320.307
57DAP/52DAP1.011750.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.974430.562
17DAP/reference0.987040.777
27DAP/reference1.129540.415
39DAP/reference0.972070.638
41DAP/reference0.938930.542
42DAP/reference1.48610.001
43DAP/reference1.219220.018
47DAP/reference1.384240.001
52DAP/reference1.551710.009
57DAP/reference1.2690.026

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.784790.096
27DAP/17DAP0.749540.135
39DAP/27DAP1.606710.08
41DAP/39DAP1.003451
42DAP/41DAP0.785290.061
43DAP/42DAP1.887920.013
47DAP/43DAP1.116110.61
52DAP/47DAP1.129540.656
57DAP/52DAP1.093010.654
57DAP/7DAP1.623330.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.29610.068
17DAP/reference1.323460.015
27DAP/reference1.265740.006
39DAP/reference1.481970.018
41DAP/reference1.321230.077
42DAP/reference1.230260.1
43DAP/reference1.732620.007
47DAP/reference1.313350.052
52DAP/reference1.427670.011
57DAP/reference2.243560.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.795090.049
17DAP/reference1.429430.017
27DAP/reference1.086590.595
39DAP/reference1.208510.071
41DAP/reference1.512370.014
42DAP/reference1.224920.081
43DAP/reference1.339250.259
47DAP/reference1.55410.008
52DAP/reference1.129920.3
57DAP/reference1.234450.177

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.012561
17DAP/reference0.884230.281
27DAP/reference1.418790.207
39DAP/reference1.24870.182
41DAP/reference1.244590.016
42DAP/reference1.287660.039
43DAP/reference1.564410.011
47DAP/reference1.434260.007
52DAP/reference1.352770.088
57DAP/reference1.495680.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.297480.966
26DAP/20DAP1.366420.941
34DAP/26DAP0.912480.857
51DAP/34DAP0.767910.385
52DAP/51DAP1.038031
53DAP/52DAP0.879580.741
55DAP/53DAP1.135980.927
57DAP/55DAP0.991410.902
62DAP/57DAP1.289760.35
68DAP/62DAP1.195920.589
68DAP/14DAP0.903671

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.669970.015

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.287740.068
Mature Green Tomato/Ripe Tomato0.331880.019
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.270010.224
Mature Eggplant/Ripe Tomato0.044490.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.134171
1-1-2/M821.063531
12-2/M822.125010.519
12-4/M820.81170.619
1-3/M821.441580.479
2-1-1/M820.951751
2-1/M820.952521
2-6/M821.698750.452
3-2/M821.027840.84
4-1-1/M821.34617
4-1/M820.999571
4-3-2/M821.647850.508
4-3/M821.752470.268
5-3/M820.699270.642
6-2/M821.107570.235
6-3/M821.053831
7-1/M820.756060.803
7-2/M821.12350.385
9-3-2/M821.06125

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.607820.243
IL2-6/WTpooled1.604770.456
IL7-5/WTpooled0.631821
IL7-3/WTpooled1.124111
IL12-4/WTpooled0.861810.581
IL1-4/WTpooled0.673890.476
WT/WTpooled0.972881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.469840.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.410890.846
DC3000/delta hrp 6h1.556210.11
DC3000/delta hrp 12h1.404371
DC3000/delta hrp 24h0.966870.782

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.67697
DC3000 delta B/DC3000 delta AB1.13160.437

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.248721
Exp 36h1.080431
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.04551
Var 0h0.92591
Var 12h I row2-row11.140730.296
Var 12h NI row2-row11.047191
Var 36h I row2-row11.199820.304
Var 36h NI row2-row10.948090.743
Var 60h I row2-row10.894420.582
Var 60h NI row2-row10.681930.408
Time course 0hI-0hNI1.141390.719
Time course 12hI-12hNI1.582160.007
Time course 36hI-36hNI2.78910.006
Time course 60hI-60hNI4.764470.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.766740.286
transgenic ySAMdc/azygous control (breaker)0.366930.122
transgenic ySAMdc/azygous control (red)1.179470.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.254480.069

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.286750.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.763010.172
Manapal/WT (break)1.168960.381
Manapal/WT (red)0.659140.181