Expression of 1-1-8.1.11.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.56190.198
27DAP/17DAP1.274760.723
39DAP/27DAP1.103140.841
41DAP/39DAP0.878660.512
42DAP/41DAP0.800570.397
43DAP/42DAP1.001620.937
47DAP/43DAP1.187820.172
52DAP/47DAP1.121620.758
57DAP/52DAP1.135450.955

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.900420.078
17DAP/reference1.014160.874
27DAP/reference1.272360.037
39DAP/reference1.014240.76
41DAP/reference1.080570.062
42DAP/reference1.0030.665
43DAP/reference1.003241
47DAP/reference1.257220.003
52DAP/reference0.981810.515
57DAP/reference1.05460.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.98750.782
27DAP/17DAP1.123270.569
39DAP/27DAP0.981350.747
41DAP/39DAP0.900540.246
42DAP/41DAP1.044260.886
43DAP/42DAP0.90540.181
47DAP/43DAP0.997510.99
52DAP/47DAP1.059620.776
57DAP/52DAP1.055930.793
57DAP/7DAP1.262540.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016461
17DAP/reference1.080230.199
27DAP/reference0.949250.082
39DAP/reference1.090680.048
41DAP/reference1.146020.027
42DAP/reference1.110910.1
43DAP/reference1.123320.457
47DAP/reference1.18590.139
52DAP/reference1.21180.076
57DAP/reference1.377560.029

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902420.268
17DAP/reference1.072420.571
27DAP/reference1.066970.345
39DAP/reference0.995190.586
41DAP/reference0.9020.091
42DAP/reference1.008520.655
43DAP/reference0.983880.657
47DAP/reference1.112990.045
52DAP/reference0.892980.131
57DAP/reference0.934930.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.883560.061
17DAP/reference0.944410.433
27DAP/reference1.01420.903
39DAP/reference0.968730.199
41DAP/reference0.895710.058
42DAP/reference0.918750.361
43DAP/reference0.906830.131
47DAP/reference1.111160.251
52DAP/reference1.139030.182
57DAP/reference1.249370.239

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009681
26DAP/20DAP1.128050.865
34DAP/26DAP1.253090.819
51DAP/34DAP0.845720.24
52DAP/51DAP0.889370.151
53DAP/52DAP0.988210.929
55DAP/53DAP1.019470.927
57DAP/55DAP1.25090.779
62DAP/57DAP1.010741
68DAP/62DAP1.258490.821
68DAP/14DAP1.259970.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.802440.037

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.854560.058
Mature Green Tomato/Ripe Tomato0.813460.047
Immature Eggplant/Mature Eggplant0.759960.096
Ripe Pepper/Ripe Tomato0.513890.224
Mature Eggplant/Ripe Tomato0.626240.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.010881
1-1-2/M820.968631
12-2/M821.001051
12-4/M820.96681
1-3/M821.143121
2-1-1/M821.312770.689
2-1/M820.956240.74
2-6/M821.089170.452
3-2/M821.033370.967
4-1-1/M821.10491
4-1/M821.000181
4-3-2/M820.917140.698
4-3/M820.945831
5-3/M821.067911
6-2/M820.924671
6-3/M821.031791
7-1/M821.16736
7-2/M820.979980.881
9-3-2/M821.04335

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.288360.493
IL2-6/WTpooled1.544670.788
IL7-5/WTpooled1.39085
IL7-3/WTpooled0.755730.418
IL12-4/WTpooled1.03441
IL1-4/WTpooled1.517530.426
WT/WTpooled0.989931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.114570.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.072460.823
DC3000/delta hrp 6h0.846020.95
DC3000/delta hrp 12h0.967351
DC3000/delta hrp 24h0.976810.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.308090.102
DC3000 delta B/DC3000 delta AB1.21120.243

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.906650.328
Exp 36h1.111041
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970991
Var 0h0.793130.457
Var 12h I row2-row11.116880.324
Var 12h NI row2-row10.999231
Var 36h I row2-row10.914381
Var 36h NI row2-row11.591371
Var 60h I row2-row11.107411
Var 60h NI row2-row11.172850.904
Time course 0hI-0hNI1.093510.719
Time course 12hI-12hNI1.056410.615
Time course 36hI-36hNI1.258760.007
Time course 60hI-60hNI1.243510.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.966390.722
transgenic ySAMdc/azygous control (breaker)0.781160.251
transgenic ySAMdc/azygous control (red)0.832091

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.975360.631

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.413160.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.934961
Manapal/WT (break)0.808751
Manapal/WT (red)1.139760.164