Expression of 1-1-8.1.11.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.5619 | 0.198 |
27DAP/17DAP | 1.27476 | 0.723 |
39DAP/27DAP | 1.10314 | 0.841 |
41DAP/39DAP | 0.87866 | 0.512 |
42DAP/41DAP | 0.80057 | 0.397 |
43DAP/42DAP | 1.00162 | 0.937 |
47DAP/43DAP | 1.18782 | 0.172 |
52DAP/47DAP | 1.12162 | 0.758 |
57DAP/52DAP | 1.13545 | 0.955 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90042 | 0.078 |
17DAP/reference | 1.01416 | 0.874 |
27DAP/reference | 1.27236 | 0.037 |
39DAP/reference | 1.01424 | 0.76 |
41DAP/reference | 1.08057 | 0.062 |
42DAP/reference | 1.003 | 0.665 |
43DAP/reference | 1.00324 | 1 |
47DAP/reference | 1.25722 | 0.003 |
52DAP/reference | 0.98181 | 0.515 |
57DAP/reference | 1.0546 | 0.802 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.9875 | 0.782 |
27DAP/17DAP | 1.12327 | 0.569 |
39DAP/27DAP | 0.98135 | 0.747 |
41DAP/39DAP | 0.90054 | 0.246 |
42DAP/41DAP | 1.04426 | 0.886 |
43DAP/42DAP | 0.9054 | 0.181 |
47DAP/43DAP | 0.99751 | 0.99 |
52DAP/47DAP | 1.05962 | 0.776 |
57DAP/52DAP | 1.05593 | 0.793 |
57DAP/7DAP | 1.26254 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01646 | 1 |
17DAP/reference | 1.08023 | 0.199 |
27DAP/reference | 0.94925 | 0.082 |
39DAP/reference | 1.09068 | 0.048 |
41DAP/reference | 1.14602 | 0.027 |
42DAP/reference | 1.11091 | 0.1 |
43DAP/reference | 1.12332 | 0.457 |
47DAP/reference | 1.1859 | 0.139 |
52DAP/reference | 1.2118 | 0.076 |
57DAP/reference | 1.37756 | 0.029 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90242 | 0.268 |
17DAP/reference | 1.07242 | 0.571 |
27DAP/reference | 1.06697 | 0.345 |
39DAP/reference | 0.99519 | 0.586 |
41DAP/reference | 0.902 | 0.091 |
42DAP/reference | 1.00852 | 0.655 |
43DAP/reference | 0.98388 | 0.657 |
47DAP/reference | 1.11299 | 0.045 |
52DAP/reference | 0.89298 | 0.131 |
57DAP/reference | 0.93493 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88356 | 0.061 |
17DAP/reference | 0.94441 | 0.433 |
27DAP/reference | 1.0142 | 0.903 |
39DAP/reference | 0.96873 | 0.199 |
41DAP/reference | 0.89571 | 0.058 |
42DAP/reference | 0.91875 | 0.361 |
43DAP/reference | 0.90683 | 0.131 |
47DAP/reference | 1.11116 | 0.251 |
52DAP/reference | 1.13903 | 0.182 |
57DAP/reference | 1.24937 | 0.239 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00968 | 1 |
26DAP/20DAP | 1.12805 | 0.865 |
34DAP/26DAP | 1.25309 | 0.819 |
51DAP/34DAP | 0.84572 | 0.24 |
52DAP/51DAP | 0.88937 | 0.151 |
53DAP/52DAP | 0.98821 | 0.929 |
55DAP/53DAP | 1.01947 | 0.927 |
57DAP/55DAP | 1.2509 | 0.779 |
62DAP/57DAP | 1.01074 | 1 |
68DAP/62DAP | 1.25849 | 0.821 |
68DAP/14DAP | 1.25997 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.80244 | 0.037 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.85456 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.81346 | 0.047 |
Immature Eggplant/Mature Eggplant | 0.75996 | 0.096 |
Ripe Pepper/Ripe Tomato | 0.51389 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.62624 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01088 | 1 |
1-1-2/M82 | 0.96863 | 1 |
12-2/M82 | 1.00105 | 1 |
12-4/M82 | 0.9668 | 1 |
1-3/M82 | 1.14312 | 1 |
2-1-1/M82 | 1.31277 | 0.689 |
2-1/M82 | 0.95624 | 0.74 |
2-6/M82 | 1.08917 | 0.452 |
3-2/M82 | 1.03337 | 0.967 |
4-1-1/M82 | 1.1049 | 1 |
4-1/M82 | 1.00018 | 1 |
4-3-2/M82 | 0.91714 | 0.698 |
4-3/M82 | 0.94583 | 1 |
5-3/M82 | 1.06791 | 1 |
6-2/M82 | 0.92467 | 1 |
6-3/M82 | 1.03179 | 1 |
7-1/M82 | 1.16736 | |
7-2/M82 | 0.97998 | 0.881 |
9-3-2/M82 | 1.04335 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.28836 | 0.493 |
IL2-6/WTpooled | 1.54467 | 0.788 |
IL7-5/WTpooled | 1.39085 | |
IL7-3/WTpooled | 0.75573 | 0.418 |
IL12-4/WTpooled | 1.0344 | 1 |
IL1-4/WTpooled | 1.51753 | 0.426 |
WT/WTpooled | 0.98993 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11457 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07246 | 0.823 |
DC3000/delta hrp 6h | 0.84602 | 0.95 |
DC3000/delta hrp 12h | 0.96735 | 1 |
DC3000/delta hrp 24h | 0.97681 | 0.861 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.30809 | 0.102 |
DC3000 delta B/DC3000 delta AB | 1.2112 | 0.243 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90665 | 0.328 |
Exp 36h | 1.11104 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97099 | 1 |
Var 0h | 0.79313 | 0.457 |
Var 12h I row2-row1 | 1.11688 | 0.324 |
Var 12h NI row2-row1 | 0.99923 | 1 |
Var 36h I row2-row1 | 0.91438 | 1 |
Var 36h NI row2-row1 | 1.59137 | 1 |
Var 60h I row2-row1 | 1.10741 | 1 |
Var 60h NI row2-row1 | 1.17285 | 0.904 |
Time course 0hI-0hNI | 1.09351 | 0.719 |
Time course 12hI-12hNI | 1.05641 | 0.615 |
Time course 36hI-36hNI | 1.25876 | 0.007 |
Time course 60hI-60hNI | 1.24351 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96639 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.78116 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.83209 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97536 | 0.631 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.41316 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93496 | 1 |
Manapal/WT (break) | 0.80875 | 1 |
Manapal/WT (red) | 1.13976 | 0.164 |
|
|