Expression of 1-1-8.1.11.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.059540.786
27DAP/17DAP1.030020.91
39DAP/27DAP0.953060.631
41DAP/39DAP1.023050.973
42DAP/41DAP1.265180.66
43DAP/42DAP0.994090.937
47DAP/43DAP0.91620.701
52DAP/47DAP1.134150.702
57DAP/52DAP0.993910.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.089280.587
17DAP/reference1.048890.442
27DAP/reference0.997780.885
39DAP/reference0.924270.298
41DAP/reference0.998851
42DAP/reference1.07190.276
43DAP/reference0.979950.675
47DAP/reference1.002320.764
52DAP/reference0.977920.53
57DAP/reference0.991330.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.968090.578
27DAP/17DAP1.044510.893
39DAP/27DAP1.021650.707
41DAP/39DAP1.037910.719
42DAP/41DAP0.999240.913
43DAP/42DAP1.005190.83
47DAP/43DAP0.970950.805
52DAP/47DAP1.001931
57DAP/52DAP1.035970.818
57DAP/7DAP1.024621

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00361
17DAP/reference0.955390.108
27DAP/reference0.903360.01
39DAP/reference0.976450.198
41DAP/reference1.025460.655
42DAP/reference1.026190.534
43DAP/reference1.05380.637
47DAP/reference1.032470.618
52DAP/reference0.97940.332
57DAP/reference1.040750.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.015650.894
17DAP/reference1.060140.357
27DAP/reference0.938070.292
39DAP/reference0.973860.416
41DAP/reference0.884590.242
42DAP/reference0.997690.723
43DAP/reference1.051960.479
47DAP/reference1.043340.527
52DAP/reference1.035730.629
57DAP/reference1.06880.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998140.75
17DAP/reference0.966740.452
27DAP/reference0.952740.076
39DAP/reference0.917270.069
41DAP/reference0.91640.058
42DAP/reference0.873030.032
43DAP/reference0.972040.449
47DAP/reference0.949340.306
52DAP/reference0.93680.368
57DAP/reference0.860010.061

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.999591
26DAP/20DAP0.971321
34DAP/26DAP1.06170.819
51DAP/34DAP0.956450.703
52DAP/51DAP0.984261
53DAP/52DAP1.177180.221
55DAP/53DAP1.082930.681
57DAP/55DAP1.137920.559
62DAP/57DAP0.961760.681
68DAP/62DAP1.177670.759
68DAP/14DAP1.126750.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.991880.737

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.837660.295
Mature Green Tomato/Ripe Tomato1.087680.632
Immature Eggplant/Mature Eggplant1.625660.05
Ripe Pepper/Ripe Tomato0.593540.224
Mature Eggplant/Ripe Tomato0.947511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063190.742
1-1-2/M821.037591
12-2/M820.99811
12-4/M821.046111
1-3/M821.067190.277
2-1-1/M821.061111
2-1/M821.248370.345
2-6/M821.009471
3-2/M820.966490.451
4-1-1/M820.914221
4-1/M821.075950.853
4-3-2/M820.948191
4-3/M821.08691
5-3/M821.02121
6-2/M821.026311
6-3/M821.039181
7-1/M820.93050.803
7-2/M820.975950.881
9-3-2/M821.004061

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.801130.247
IL2-6/WTpooled0.996531
IL7-5/WTpooled1.366141
IL7-3/WTpooled0.977861
IL12-4/WTpooled1.001091
IL1-4/WTpooled1.019721
WT/WTpooled0.988361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.993771

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.139740.921
DC3000/delta hrp 6h1.180581
DC3000/delta hrp 12h1.004191
DC3000/delta hrp 24h1.00251

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.821850.023
DC3000 delta B/DC3000 delta AB0.835260.033

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.077351
Exp 36h1.250720.693
Exp 60h1.445740.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.075561
Var 0h1.151220.936
Var 12h I row2-row10.97680.856
Var 12h NI row2-row11.023681
Var 36h I row2-row10.983481
Var 36h NI row2-row11.118230.276
Var 60h I row2-row11.190311
Var 60h NI row2-row11.147070.904
Time course 0hI-0hNI0.976880.849
Time course 12hI-12hNI1.077230.554
Time course 36hI-36hNI1.059480.722
Time course 60hI-60hNI1.110450.302

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.132510.397
transgenic ySAMdc/azygous control (breaker)0.934280.49
transgenic ySAMdc/azygous control (red)1.018170.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.090480.038

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.568250.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.864421
Manapal/WT (red)0.681260.181