Expression of 1-1-8.1.11.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05954 | 0.786 |
27DAP/17DAP | 1.03002 | 0.91 |
39DAP/27DAP | 0.95306 | 0.631 |
41DAP/39DAP | 1.02305 | 0.973 |
42DAP/41DAP | 1.26518 | 0.66 |
43DAP/42DAP | 0.99409 | 0.937 |
47DAP/43DAP | 0.9162 | 0.701 |
52DAP/47DAP | 1.13415 | 0.702 |
57DAP/52DAP | 0.99391 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08928 | 0.587 |
17DAP/reference | 1.04889 | 0.442 |
27DAP/reference | 0.99778 | 0.885 |
39DAP/reference | 0.92427 | 0.298 |
41DAP/reference | 0.99885 | 1 |
42DAP/reference | 1.0719 | 0.276 |
43DAP/reference | 0.97995 | 0.675 |
47DAP/reference | 1.00232 | 0.764 |
52DAP/reference | 0.97792 | 0.53 |
57DAP/reference | 0.99133 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96809 | 0.578 |
27DAP/17DAP | 1.04451 | 0.893 |
39DAP/27DAP | 1.02165 | 0.707 |
41DAP/39DAP | 1.03791 | 0.719 |
42DAP/41DAP | 0.99924 | 0.913 |
43DAP/42DAP | 1.00519 | 0.83 |
47DAP/43DAP | 0.97095 | 0.805 |
52DAP/47DAP | 1.00193 | 1 |
57DAP/52DAP | 1.03597 | 0.818 |
57DAP/7DAP | 1.02462 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0036 | 1 |
17DAP/reference | 0.95539 | 0.108 |
27DAP/reference | 0.90336 | 0.01 |
39DAP/reference | 0.97645 | 0.198 |
41DAP/reference | 1.02546 | 0.655 |
42DAP/reference | 1.02619 | 0.534 |
43DAP/reference | 1.0538 | 0.637 |
47DAP/reference | 1.03247 | 0.618 |
52DAP/reference | 0.9794 | 0.332 |
57DAP/reference | 1.04075 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01565 | 0.894 |
17DAP/reference | 1.06014 | 0.357 |
27DAP/reference | 0.93807 | 0.292 |
39DAP/reference | 0.97386 | 0.416 |
41DAP/reference | 0.88459 | 0.242 |
42DAP/reference | 0.99769 | 0.723 |
43DAP/reference | 1.05196 | 0.479 |
47DAP/reference | 1.04334 | 0.527 |
52DAP/reference | 1.03573 | 0.629 |
57DAP/reference | 1.0688 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99814 | 0.75 |
17DAP/reference | 0.96674 | 0.452 |
27DAP/reference | 0.95274 | 0.076 |
39DAP/reference | 0.91727 | 0.069 |
41DAP/reference | 0.9164 | 0.058 |
42DAP/reference | 0.87303 | 0.032 |
43DAP/reference | 0.97204 | 0.449 |
47DAP/reference | 0.94934 | 0.306 |
52DAP/reference | 0.9368 | 0.368 |
57DAP/reference | 0.86001 | 0.061 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99959 | 1 |
26DAP/20DAP | 0.97132 | 1 |
34DAP/26DAP | 1.0617 | 0.819 |
51DAP/34DAP | 0.95645 | 0.703 |
52DAP/51DAP | 0.98426 | 1 |
53DAP/52DAP | 1.17718 | 0.221 |
55DAP/53DAP | 1.08293 | 0.681 |
57DAP/55DAP | 1.13792 | 0.559 |
62DAP/57DAP | 0.96176 | 0.681 |
68DAP/62DAP | 1.17767 | 0.759 |
68DAP/14DAP | 1.12675 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99188 | 0.737 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.83766 | 0.295 |
Mature Green Tomato/Ripe Tomato | 1.08768 | 0.632 |
Immature Eggplant/Mature Eggplant | 1.62566 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.59354 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.94751 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06319 | 0.742 |
1-1-2/M82 | 1.03759 | 1 |
12-2/M82 | 0.9981 | 1 |
12-4/M82 | 1.04611 | 1 |
1-3/M82 | 1.06719 | 0.277 |
2-1-1/M82 | 1.06111 | 1 |
2-1/M82 | 1.24837 | 0.345 |
2-6/M82 | 1.00947 | 1 |
3-2/M82 | 0.96649 | 0.451 |
4-1-1/M82 | 0.91422 | 1 |
4-1/M82 | 1.07595 | 0.853 |
4-3-2/M82 | 0.94819 | 1 |
4-3/M82 | 1.0869 | 1 |
5-3/M82 | 1.0212 | 1 |
6-2/M82 | 1.02631 | 1 |
6-3/M82 | 1.03918 | 1 |
7-1/M82 | 0.9305 | 0.803 |
7-2/M82 | 0.97595 | 0.881 |
9-3-2/M82 | 1.00406 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80113 | 0.247 |
IL2-6/WTpooled | 0.99653 | 1 |
IL7-5/WTpooled | 1.36614 | 1 |
IL7-3/WTpooled | 0.97786 | 1 |
IL12-4/WTpooled | 1.00109 | 1 |
IL1-4/WTpooled | 1.01972 | 1 |
WT/WTpooled | 0.98836 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99377 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.13974 | 0.921 |
DC3000/delta hrp 6h | 1.18058 | 1 |
DC3000/delta hrp 12h | 1.00419 | 1 |
DC3000/delta hrp 24h | 1.0025 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.82185 | 0.023 |
DC3000 delta B/DC3000 delta AB | 0.83526 | 0.033 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07735 | 1 |
Exp 36h | 1.25072 | 0.693 |
Exp 60h | 1.44574 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.07556 | 1 |
Var 0h | 1.15122 | 0.936 |
Var 12h I row2-row1 | 0.9768 | 0.856 |
Var 12h NI row2-row1 | 1.02368 | 1 |
Var 36h I row2-row1 | 0.98348 | 1 |
Var 36h NI row2-row1 | 1.11823 | 0.276 |
Var 60h I row2-row1 | 1.19031 | 1 |
Var 60h NI row2-row1 | 1.14707 | 0.904 |
Time course 0hI-0hNI | 0.97688 | 0.849 |
Time course 12hI-12hNI | 1.07723 | 0.554 |
Time course 36hI-36hNI | 1.05948 | 0.722 |
Time course 60hI-60hNI | 1.11045 | 0.302 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13251 | 0.397 |
transgenic ySAMdc/azygous control (breaker) | 0.93428 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.01817 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.09048 | 0.038 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.56825 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.86442 | 1 |
Manapal/WT (red) | 0.68126 | 0.181 |
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