Expression of 1-1-8.1.11.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.975630.779
27DAP/17DAP1.169490.845
39DAP/27DAP1.015830.857
41DAP/39DAP1.083230.822
42DAP/41DAP1.155840.888
43DAP/42DAP0.935160.721
47DAP/43DAP1.20880.633
52DAP/47DAP1.075050.902
57DAP/52DAP1.127980.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.596940.01
17DAP/referenceN/AN/A
27DAP/reference1.060720.925
39DAP/reference0.814320.487
41DAP/reference1.145681
42DAP/reference1.187740.182
43DAP/reference0.83871
47DAP/reference1.005420.636
52DAP/reference1.907690.088
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.995830.763
27DAP/17DAP1.003530.969
39DAP/27DAP1.132240.654
41DAP/39DAP1.022251
42DAP/41DAP1.187870.559
43DAP/42DAP1.027760.788
47DAP/43DAP1.140580.88
52DAP/47DAP1.157350.676
57DAP/52DAP1.266260.154
57DAP/7DAP0.845581

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.15766
17DAP/reference1.296490.006
27DAP/reference1.343730.01
39DAP/reference1.050630.705
41DAP/reference1.089240.077
42DAP/reference1.118860.174
43DAP/reference0.89793
47DAP/reference0.966170.222
52DAP/reference1.120040.066
57DAP/reference1.199690.033

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13070.149
17DAP/reference1.044880.674
27DAP/reference1.587790.265
39DAP/reference1.102920.29
41DAP/reference1.224680.015
42DAP/reference1.161260.987
43DAP/reference1.000110.892
47DAP/reference1.49656
52DAP/reference1.170770.026
57DAP/reference1.096080.286

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.18846
17DAP/reference1.26630.107
27DAP/reference2.738680.085
39DAP/reference1.553770.33
41DAP/reference1.691850.045
42DAP/reference1.202470.313
43DAP/reference1.13459
47DAP/reference1.023231
52DAP/reference1.024840.862
57DAP/reference1.101270.324

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.016550.966
26DAP/20DAP1.0321
34DAP/26DAP1.144681
51DAP/34DAP0.74910.121
52DAP/51DAP1.373790.058
53DAP/52DAP0.953730.797
55DAP/53DAP1.513950.039
57DAP/55DAP1.100760.986
62DAP/57DAP1.246370.622
68DAP/62DAP0.866720.7
68DAP/14DAP1.478420.041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.607450.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.218570.062
Mature Green Tomato/Ripe Tomato0.17141
Immature Eggplant/Mature Eggplant0.812080.082
Ripe Pepper/Ripe Tomato1.626490.258
Mature Eggplant/Ripe Tomato0.713781

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.949890.944
1-1-2/M821.057651
12-2/M821.034341
12-4/M820.959820.358
1-3/M821.245661
2-1-1/M820.964291
2-1/M820.61940.345
2-6/M821.041880.594
3-2/M820.96374
4-1-1/M820.85621
4-1/M82N/AN/A
4-3-2/M821.5167
4-3/M821.241630.268
5-3/M821.244421
6-2/M820.913190.497
6-3/M821.012631
7-1/M821.019741
7-2/M821.204360.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.75212

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.161220.921
DC3000/delta hrp 6h1.1350.978
DC3000/delta hrp 12h0.95411
DC3000/delta hrp 24h1.093080.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.307880.332

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.180441
Exp 36h0.985781
Exp 60h1.020441

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.10967
Var 0h0.80920.98
Var 12h I row2-row10.877630.705
Var 12h NI row2-row10.887330.443
Var 36h I row2-row11.1630.489
Var 36h NI row2-row11.266070.482
Var 60h I row2-row10.933460.952
Var 60h NI row2-row11.115230.904
Time course 0hI-0hNI1.129830.852
Time course 12hI-12hNI1.161340.554
Time course 36hI-36hNI0.918420.246
Time course 60hI-60hNI0.580580.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.949360.314
transgenic ySAMdc/azygous control (breaker)0.785170.142
transgenic ySAMdc/azygous control (red)1.05550.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.21530.105
Manapal/WT (break)1.263960.381
Manapal/WT (red)1.716570.222